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Clasrp CLK4-associating serine/arginine rich protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 499390, updated on 2-Nov-2024

Summary

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Symbol
Clasrpprovided by RGD
Full Name
CLK4-associating serine/arginine rich proteinprovided by RGD
Primary source
RGD:1563538
See related
EnsemblRapid:ENSRNOG00000046000 AllianceGenome:RGD:1563538
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Sfrs16; Srsf16
Summary
Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleoplasm. Orthologous to human CLASRP (CLK4 associating serine/arginine rich protein). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 83.6), Lung (RPKM 58.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Clasrp in Genome Data Viewer
Location:
1q21
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88360235..88384343, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79232260..79256462, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (80491520..80515761, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene gem (nuclear organelle) associated protein 7 Neighboring gene zinc finger protein 296 Neighboring gene RELB proto-oncogene, NF-kB subunit Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene uncharacterized LOC134482894

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CLK4-associating serine/arginine rich protein
Names
serine/arginine-rich splicing factor 16
splicing factor, arginine/serine-rich 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024294.2 → NP_001019465.2  CLK4-associating serine/arginine rich protein

    See identical proteins and their annotated locations for NP_001019465.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/Swiss-Prot
    Q5HZB6
    UniProtKB/TrEMBL
    A0A8L2RAC0
    Related
    ENSRNOP00000066334.1, ENSRNOT00000075144.4
    Conserved Domains (1) summary
    pfam09750
    Location:41 → 169
    DRY_EERY; Alternative splicing regulator

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    88360235..88384343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271793.1 → XP_063127863.1  CLK4-associating serine/arginine rich protein isoform X1

  2. XM_063271795.1 → XP_063127865.1  CLK4-associating serine/arginine rich protein isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5HZB6.2 GenPept UniProtKB/Swiss-Prot:Q5HZB6

Gene LinkOut

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