U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Znrd1as1 ZNRD1 antisense RNA 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499401, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Znrd1as1provided by RGD
Official Full Name
ZNRD1 antisense RNA 1provided by RGD
Primary source
RGD:1564067
See related
EnsemblRapid:ENSRNOG00000077011 AllianceGenome:RGD:1564067
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tcte4; Tctex4; Znrd1as; RGD1564067
Expression
Biased expression in Testes (RPKM 79.5), Adrenal (RPKM 42.7) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Znrd1as1 in Genome Data Viewer
Location:
20p12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (1593908..1600355, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (1568105..1595084, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (2082259..2088413, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene RT1 class I, locus M6, gene 1 Neighboring gene RT1 class I, locus M6, gene 2 Neighboring gene RNA polymerase I subunit H Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 11 Neighboring gene ring finger protein 39 Neighboring gene uncharacterized LOC102554813

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, et al. Genome Res, 2004 Apr. PMID 15060004, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
ZNRD1 antisense RNA 1
Names
t-complex testis-expressed 4
t-complex-associated testis expressed 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395156.1 → NP_001382085.1  ZNRD1 antisense RNA 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    F1LQH1
    Related
    ENSRNOP00000098149.2, ENSRNOT00000120449.2
    Conserved Domains (1) summary
    pfam17658
    Location:10 → 155
    DUF5520; Family of unknown function (DUF5520)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    1593908..1600355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008772699.4 → XP_008770921.1  ZNRD1 antisense RNA 1 isoform X2

    UniProtKB/TrEMBL
    F1LQH1
    Conserved Domains (1) summary
    pfam17658
    Location:10 → 155
    DUF5520; Family of unknown function (DUF5520)

  2. XM_006255877.5 → XP_006255939.1  ZNRD1 antisense RNA 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A0A7
    Related
    ENSRNOP00000085520.1, ENSRNOT00000085106.4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001166303.1: Suppressed sequence

    Description
    NM_001166303.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools