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Lrrc20 leucine rich repeat containing 20 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499430, updated on 2-Nov-2024

Summary

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Official Symbol
Lrrc20provided by RGD
Official Full Name
leucine rich repeat containing 20provided by RGD
Primary source
RGD:1566140
See related
EnsemblRapid:ENSRNOG00000000560 AllianceGenome:RGD:1566140
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566140
Summary
Orthologous to human LRRC20 (leucine rich repeat containing 20). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 233.3), Heart (RPKM 60.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Lrrc20 in Genome Data Viewer
Location:
20q11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (29965673..30071185)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (29422858..29528372)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (31069406..31202502)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 Neighboring gene cysteine and glycine-rich protein 2, pseudogene 1 Neighboring gene ribosomal protein L27, pseudogene 8 Neighboring gene uncharacterized LOC134483917 Neighboring gene neuropeptide FF receptor 1 Neighboring gene inorganic pyrophosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
leucine-rich repeat-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109171.1 → NP_001102641.1  leucine-rich repeat-containing protein 20

    See identical proteins and their annotated locations for NP_001102641.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474016
    UniProtKB/TrEMBL
    A0A0G2K395, A6K400, F1LUD9
    Related
    ENSRNOP00000000676.6, ENSRNOT00000000676.9
    Conserved Domains (4) summary
    cd00116
    Location:27 → 159
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:76 → 98
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:26 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:98 → 156
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    29965673..30071185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006256465.3 → XP_006256527.1  leucine-rich repeat-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_006256527.1

    Conserved Domains (4) summary
    cd00116
    Location:26 → 160
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:76 → 98
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:26 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:74 → 132
    LRR_8; Leucine rich repeat

  2. XM_063279468.1 → XP_063135538.1  leucine-rich repeat-containing protein 20 isoform X2

    UniProtKB/TrEMBL
    A6K400, F1LUD9

  3. XM_039099014.2 → XP_038954942.1  leucine-rich repeat-containing protein 20 isoform X3

    Conserved Domains (2) summary
    PLN03150
    Location:20 → 92
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:7 → 29
    LRR_1; leucine-rich repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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