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Ift70b intraflagellar transport 70B [ Rattus norvegicus (Norway rat) ]

Gene ID: 499814, updated on 2-Nov-2024

Summary

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Official Symbol
Ift70bprovided by RGD
Official Full Name
intraflagellar transport 70Bprovided by RGD
Primary source
RGD:1590784
See related
AllianceGenome:RGD:1590784
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ttc30b
Summary
Predicted to enable intraciliary transport particle B binding activity. Predicted to be involved in intraciliary transport. Predicted to be part of intraciliary transport particle B. Predicted to be active in axonemal microtubule. Orthologous to several human genes including IFT70B (intraflagellar transport 70B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See Ift70b in Genome Data Viewer
Location:
3q23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (81263074..81265645, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (60855809..60858380, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (62758754..62761325, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486388 Neighboring gene transfer RNA proline (anticodon GGG) 5 Neighboring gene alkylglycerone phosphate synthase Neighboring gene uncharacterized LOC134486389 Neighboring gene intraflagellar transport 70A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction of mouse TTC30/DYF-1 with multiple intraflagellar transport complex B proteins and KIF17. Howard PW, et al. Exp Cell Res, 2013 Aug 15. PMID 23810713, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC188467

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables intraciliary transport particle B binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in intraciliary transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in axonemal microtubule IEA
Inferred from Electronic Annotation
more info
  
part_of intraciliary transport particle B IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of intraciliary transport particle B ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
intraflagellar transport protein 70B
Names
TPR repeat protein 30B
tetratricopeptide repeat domain 30B
tetratricopeptide repeat protein 30B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127607.1 → NP_001121079.1  intraflagellar transport protein 70B

    See identical proteins and their annotated locations for NP_001121079.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166739
    UniProtKB/Swiss-Prot
    B2RYD6
    UniProtKB/TrEMBL
    A0A0H2UHX9
    Conserved Domains (3) summary
    sd00006
    Location:157 → 181
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:158 → 215
    TPR_11; TPR repeat
    pfam14559
    Location:21 → 87
    TPR_19; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    81263074..81265645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RYD6.1 GenPept UniProtKB/Swiss-Prot:B2RYD6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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