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Tcp11l1 t-complex 11 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499846, updated on 2-Nov-2024

Summary

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Official Symbol
Tcp11l1provided by RGD
Official Full Name
t-complex 11 like 1provided by RGD
Primary source
RGD:1562313
See related
EnsemblRapid:ENSRNOG00000042576 AllianceGenome:RGD:1562313
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562313
Summary
Predicted to be involved in signal transduction. Predicted to be located in microtubule. Orthologous to human TCP11L1 (t-complex 11 like 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 92.6), Kidney (RPKM 62.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tcp11l1 in Genome Data Viewer
Location:
3q32
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (111478787..111547553, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (91047006..91092687, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (94621433..94657467, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene homeodomain interacting protein kinase 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene cleavage stimulation factor subunit 3 Neighboring gene uncharacterized LOC134486132 Neighboring gene DEP domain containing 7 Neighboring gene glutamine and serine rich 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. PEX14 is required for microtubule-based peroxisome motility in human cells. Bharti P, et al. J Cell Sci, 2011 May 15. PMID 21525035
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in microtubule ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
T-complex protein 11-like protein 1
Names
t-complex 11, testis-specific-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109202.1 → NP_001102672.1  T-complex protein 11-like protein 1

    See identical proteins and their annotated locations for NP_001102672.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473949
    UniProtKB/TrEMBL
    A0A0G2K6F1, A6HNU7, F1M9Y7
    Related
    ENSRNOP00000073788.2, ENSRNOT00000077484.3
    Conserved Domains (1) summary
    pfam05794
    Location:78 → 502
    Tcp11; T-complex protein 11

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    111478787..111547553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284359.1 → XP_063140429.1  T-complex protein 11-like protein 1 isoform X2

    Related
    ENSRNOP00000101296.1, ENSRNOT00000158084.1

  2. XM_039105674.2 → XP_038961602.1  T-complex protein 11-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K6F1, A6HNU7, F1M9Y7
    Conserved Domains (1) summary
    pfam05794
    Location:78 → 502
    Tcp11; T-complex protein 11

  3. XM_017591977.3 → XP_017447466.2  T-complex protein 11-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K6F1, A6HNU7, F1M9Y7
    Conserved Domains (1) summary
    pfam05794
    Location:78 → 502
    Tcp11; T-complex protein 11
Nucleotide Protein Strain
Heading Accession and Version

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