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Hoxa11-as HOXA11 antisense RNA [ Rattus norvegicus (Norway rat) ]

Gene ID: 500128, updated on 2-Nov-2024

Summary

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Symbol
Hoxa11-asprovided by RGD
Full Name
HOXA11 antisense RNAprovided by RGD
Primary source
RGD:1564419
See related
EnsemblRapid:ENSRNOG00000050564 AllianceGenome:RGD:1564419
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hoxa11os; RGD1564419; AABR07060585.2; AABR07073021.1
Summary
Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Orthologous to human HOXA11-AS (HOXA11 antisense RNA). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Uterus (RPKM 59.0), Kidney (RPKM 25.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Hoxa11-as in Genome Data Viewer
Location:
4q24
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (82677028..82680802)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (81346416..81350190)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 Unlocalized Scaffold NW_007906169.1 (116389..120163)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene homeobox A10 Neighboring gene homeobox A11 Neighboring gene homeo box A13 Neighboring gene even-skipped homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Effects of lncRNA HOXA11-AS on Sevoflurane-Induced Neuronal Apoptosis and Inflammatory Responses by Regulating miR-98-5p/EphA4. Zhao L, et al. Mediators Inflamm, 2023. PMID 37064501, Free PMC Article
  2. Long noncoding RNA dysregulation in ischemic heart failure. Greco S, et al. J Transl Med, 2016 Jun 18. PMID 27317124, Free PMC Article
  3. Evolution of Hoxa11 regulation in vertebrates is linked to the pentadactyl state. Kherdjemil Y, et al. Nature, 2016 Nov 3. PMID 27706137, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Effects of lncRNA HOXA11-AS on Sevoflurane-Induced Neuronal Apoptosis and Inflammatory Responses by Regulating miR-98-5p/EphA4.
    Title: Effects of lncRNA HOXA11-AS on Sevoflurane-Induced Neuronal Apoptosis and Inflammatory Responses by Regulating miR-98-5p/EphA4.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Other Names

  • homeobox A11, opposite strand

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132628.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    Related
    ENSRNOT00000075254.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    82677028..82680802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001109234.1: Suppressed sequence

    Description
    NM_001109234.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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