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S100pbp S100P binding protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 500551, updated on 10-Jul-2024

Summary

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Official Symbol
S100pbpprovided by RGD
Official Full Name
S100P binding proteinprovided by RGD
Primary source
RGD:1564943
See related
EnsemblRapid:ENSRNOG00000007099 AllianceGenome:RGD:1564943
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564943
Summary
Predicted to enable calcium-dependent protein binding activity. Predicted to be located in nuclear speck. Predicted to be active in cytosol and nucleus. Orthologous to human S100PBP (S100P binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 112.9), Brain (RPKM 100.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See S100pbp in Genome Data Viewer
Location:
5q36
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (146778706..146820223, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141494352..141535752, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147333890..147375151, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 54 Neighboring gene hippocalcin Neighboring gene fibronectin type III domain containing 5 Neighboring gene U6 spliceosomal RNA Neighboring gene tyrosyl-tRNA synthetase 1 Neighboring gene NHS like 3 Neighboring gene large ribosomal subunit protein uL23-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Expression of S100P and its novel binding partner S100PBPR in early pancreatic cancer. Dowen SE, et al. Am J Pathol, 2005 Jan. PMID 15632002, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium-dependent protein binding ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
S100P-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134628.1 → NP_001128100.1  S100P-binding protein

    See identical proteins and their annotated locations for NP_001128100.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473968
    UniProtKB/TrEMBL
    A0A8I5ZRF8, A6ISH8, D3ZSX9
    Related
    ENSRNOP00000009436.3, ENSRNOT00000009436.6
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 382
    S100PBPR; S100P-binding protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    146778706..146820223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288263.1 → XP_063144333.1  S100P-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZRF8

  2. XM_039110609.2 → XP_038966537.1  S100P-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZRF8
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 263
    S100PBPR; S100P-binding protein

  3. XM_006238959.4 → XP_006239021.1  S100P-binding protein isoform X1

    See identical proteins and their annotated locations for XP_006239021.1

    UniProtKB/TrEMBL
    A0A8I5ZRF8, A6ISH8, D3ZSX9
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 382
    S100PBPR; S100P-binding protein

  4. XM_006238963.5 → XP_006239025.1  S100P-binding protein isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZRF8
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 305
    S100PBPR; S100P-binding protein

  5. XM_006238961.5 → XP_006239023.1  S100P-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZRF8
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 340
    S100PBPR; S100P-binding protein

  6. XM_006238956.5 → XP_006239018.1  S100P-binding protein isoform X1

    See identical proteins and their annotated locations for XP_006239018.1

    UniProtKB/TrEMBL
    A0A8I5ZRF8, A6ISH8, D3ZSX9
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 382
    S100PBPR; S100P-binding protein

  7. XM_063288264.1 → XP_063144334.1  S100P-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZRF8
    Related
    ENSRNOP00000080960.1, ENSRNOT00000094547.2

  8. XM_063288258.1 → XP_063144328.1  S100P-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZRF8

  9. XM_063288260.1 → XP_063144330.1  S100P-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZRF8

  10. XM_006238958.5 → XP_006239020.1  S100P-binding protein isoform X1

    See identical proteins and their annotated locations for XP_006239020.1

    UniProtKB/TrEMBL
    A0A8I5ZRF8, A6ISH8, D3ZSX9
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 382
    S100PBPR; S100P-binding protein

  11. XM_063288262.1 → XP_063144332.1  S100P-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZRF8
    Related
    ENSRNOP00000106058.1, ENSRNOT00000145202.1

  12. XM_063288259.1 → XP_063144329.1  S100P-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZRF8

  13. XM_006238957.5 → XP_006239019.1  S100P-binding protein isoform X1

    See identical proteins and their annotated locations for XP_006239019.1

    UniProtKB/TrEMBL
    A0A8I5ZRF8, A6ISH8, D3ZSX9
    Conserved Domains (1) summary
    pfam15427
    Location:21 → 382
    S100PBPR; S100P-binding protein

  14. XM_063288261.1 → XP_063144331.1  S100P-binding protein isoform X3

  15. XM_008764164.4 → XP_008762386.1  S100P-binding protein isoform X3

    See identical proteins and their annotated locations for XP_008762386.1

    Conserved Domains (1) summary
    pfam15427
    Location:21 → 322
    S100PBPR; S100P-binding protein
Nucleotide Protein Strain
Heading Accession and Version

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