U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Fhad1 forkhead associated phosphopeptide binding domain 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500577, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Fhad1provided by RGD
Official Full Name
forkhead associated phosphopeptide binding domain 1provided by RGD
Primary source
RGD:1563444
See related
EnsemblRapid:ENSRNOG00000028064 AllianceGenome:RGD:1563444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563444
Summary
Orthologous to human FHAD1 (forkhead associated phosphopeptide binding domain 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 121.0) and Lung (RPKM 45.5) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Fhad1 in Genome Data Viewer
Location:
5q36
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (159474111..159593455, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (154191593..154310442, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (160438575..160555103, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103027 Neighboring gene EF-hand domain family, member D2 Neighboring gene chymotrypsin C Neighboring gene transmembrane protein 51 Neighboring gene uncharacterized LOC134487032 Neighboring gene kazrin, periplakin interacting protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. FMRP recruitment of β-catenin to the translation pre-initiation complex represses translation. Ehyai S, et al. EMBO Rep, 2018 Dec. PMID 30361391, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC116177

General protein information

Go to the top of the page Help
Preferred Names
forkhead-associated domain-containing protein 1
Names
forkhead-associated (FHA) phosphopeptide binding domain 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044268.2 → NP_001037733.2  forkhead-associated domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    BC098024, JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A140UHW9
    Related
    ENSRNOP00000018953.7, ENSRNOT00000018953.9
    Conserved Domains (2) summary
    COG1196
    Location:230 → 926
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    159474111..159593455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110639.2 → XP_038966567.1  forkhead-associated domain-containing protein 1 isoform X6

    Conserved Domains (2) summary
    COG1196
    Location:230 → 846
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  2. XM_063288294.1 → XP_063144364.1  forkhead-associated domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZQ37
    Related
    ENSRNOP00000080164.1, ENSRNOT00000095076.2

  3. XM_039110637.2 → XP_038966565.1  forkhead-associated domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    TIGR02168
    Location:229 → 1020
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  4. XM_039110638.2 → XP_038966566.1  forkhead-associated domain-containing protein 1 isoform X5

    Conserved Domains (2) summary
    COG1196
    Location:243 → 882
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  5. XM_039110641.2 → XP_038966569.1  forkhead-associated domain-containing protein 1 isoform X8

    Conserved Domains (3) summary
    TIGR00618
    Location:648 → 1206
    sbcc; exonuclease SbcC
    COG1196
    Location:230 → 926
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  6. XM_039110640.2 → XP_038966568.1  forkhead-associated domain-containing protein 1 isoform X7

    Conserved Domains (3) summary
    PTZ00121
    Location:648 → 1248
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:230 → 926
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  7. XM_063288296.1 → XP_063144366.1  forkhead-associated domain-containing protein 1 isoform X4

  8. XM_039110636.2 → XP_038966564.1  forkhead-associated domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A140UHW9
    Conserved Domains (2) summary
    COG1196
    Location:230 → 926
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  9. XM_039110642.2 → XP_038966570.1  forkhead-associated domain-containing protein 1 isoform X9

    Conserved Domains (3) summary
    PTZ00121
    Location:648 → 1207
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:230 → 926
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  10. XM_039110643.2 → XP_038966571.1  forkhead-associated domain-containing protein 1 isoform X10

    Conserved Domains (3) summary
    COG1196
    Location:230 → 926
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:740 → 1136
    COG5022; Myosin heavy chain [General function prediction only]
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  11. XM_063288297.1 → XP_063144367.1  forkhead-associated domain-containing protein 1 isoform X11

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools