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Msantd2 Myb/SANT DNA binding domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500974, updated on 2-Nov-2024

Summary

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Official Symbol
Msantd2provided by RGD
Official Full Name
Myb/SANT DNA binding domain containing 2provided by RGD
Primary source
RGD:1562840
See related
EnsemblRapid:ENSRNOG00000009950 AllianceGenome:RGD:1562840
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 54.4), Kidney (RPKM 49.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Msantd2 in Genome Data Viewer
Location:
8q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (45389615..45423452)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (37200890..37234691)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (39959162..39994279)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene hepatic and glial cell adhesion molecule Neighboring gene uncharacterized LOC120094115 Neighboring gene roundabout guidance receptor 4 Neighboring gene roundabout guidance receptor 3 Neighboring gene uncharacterized LOC102549473 Neighboring gene endothelial cell adhesion molecule Neighboring gene V-set and immunoglobulin domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
myb/SANT-like DNA-binding domain-containing protein 2
Names
Myb/SANT-like DNA-binding domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427012.1 → NP_001413941.1  myb/SANT-like DNA-binding domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    Related
    ENSRNOP00000013370.6, ENSRNOT00000013370.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    45389615..45423452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063265963.1 → XP_063122033.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

  2. XM_056984517.2 → XP_056840497.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X2

  3. XM_056984514.2 → XP_056840494.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X1

RNA

  1. XR_001839312.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases
Research Materials