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Mab21l4 mab-21 like 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501185, updated on 2-Nov-2024

Summary

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Official Symbol
Mab21l4provided by RGD
Official Full Name
mab-21 like 4provided by RGD
Primary source
RGD:1563692
See related
EnsemblRapid:ENSRNOG00000023557 AllianceGenome:RGD:1563692
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563692
Summary
Orthologous to human MAB21L4 (mab-21 like 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 73.9) See more
Orthologs
human mouse all
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Genomic context

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See Mab21l4 in Genome Data Viewer
Location:
9q36
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (101138408..101148516, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (93690455..93701267, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (100296780..100307415, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 1A Neighboring gene uncharacterized LOC120094749 Neighboring gene alanine--glyoxylate aminotransferase Neighboring gene ciliary rootlet coiled-coil, rootletin family member 2 Neighboring gene uncharacterized LOC134480612 Neighboring gene sushi, nidogen and EGF-like domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein mab-21-like 4
Names
uncharacterized protein C2orf54 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109311.2 → NP_001102781.1  protein mab-21-like 4

    See identical proteins and their annotated locations for NP_001102781.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    B1WC80, F7FIX6
    Related
    ENSRNOP00000030463.3, ENSRNOT00000038563.5
    Conserved Domains (1) summary
    pfam03281
    Location:144 → 369
    Mab-21; Mab-21 protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    101138408..101148516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245547.5 → XP_006245609.1  protein mab-21-like 4 isoform X1

    See identical proteins and their annotated locations for XP_006245609.1

    UniProtKB/TrEMBL
    B1WC80, F7FIX6
    Conserved Domains (1) summary
    pfam03281
    Location:144 → 369
    Mab-21; Mab-21 protein

  2. XM_039084126.2 → XP_038940054.1  protein mab-21-like 4 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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