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Chchd4l1 coiled-coil-helix-coiled-coil-helix domain containing 4 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501576, updated on 17-Aug-2024

Summary

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Official Symbol
Chchd4l1provided by RGD
Official Full Name
coiled-coil-helix-coiled-coil-helix domain containing 4 like 1provided by RGD
Primary source
RGD:1564534
See related
EnsemblRapid:ENSRNOG00000032038 AllianceGenome:RGD:1564534
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564534
Expression
Biased expression in Testes (RPKM 34.7), Spleen (RPKM 21.6) and 8 other tissues See more
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Genomic context

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See Chchd4l1 in Genome Data Viewer
Location:
Xq22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (62690390..62696524)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (58696582..58702716)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (63053031..63059164)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene SUPT20H like 2 Neighboring gene suprabasin-like Neighboring gene serine and arginine rich splicing factor 3, pseudogene 2 Neighboring gene Supt20h like 1 Neighboring gene 14-3-3 protein sigma-like Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. RGD1564534 represses NLRP3 inflammasome activity in cerebral injury following ischemia-reperfusion by impairing miR-101a-3p-mediated Dusp1 inhibition. Fan W, et al. Exp Neurol, 2023 Jan. PMID 36336032
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RGD1564534 represses NLRP3 inflammasome activity in cerebral injury following ischemia-reperfusion by impairing miR-101a-3p-mediated Dusp1 inhibition.
    Title: RGD1564534 represses NLRP3 inflammasome activity in cerebral injury following ischemia-reperfusion by impairing miR-101a-3p-mediated Dusp1 inhibition.
Submit: New GeneRIF Correction

General gene information

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Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein-disulfide reductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein import into mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028321.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC111405
    Related
    ENSRNOT00000043280.6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    62690390..62696524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001048046.1: Suppressed sequence

    Description
    NM_001048046.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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