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Loricrin loricrin cornified envelope precursor protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 502541, updated on 2-Nov-2024

Summary

Official Symbol
Loricrinprovided by RGD
Official Full Name
loricrin cornified envelope precursor proteinprovided by RGD
Primary source
RGD:1559993
See related
EnsemblRapid:ENSRNOG00000059604 AllianceGenome:RGD:1559993
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Lor; RGD1559993
Summary
Predicted to be a structural constituent of cytoskeleton and structural constituent of skin epidermis. Predicted to be involved in keratinocyte differentiation and peptide cross-linking. Predicted to be located in cytoplasm and cytoplasmic side of plasma membrane. Predicted to be active in cornified envelope. Orthologous to human LORICRIN (loricrin cornified envelope precursor protein). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 9.2) and Brain (RPKM 4.0) See more
Orthologs
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Genomic context

See Loricrin in Genome Data Viewer
Location:
2q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (180253674..180256572, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (177558062..177560960, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (191984455..191990713, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene phosphate cytidylyltransferase 1A, choline, pseudogene 3 Neighboring gene 14-3-3 protein theta-like Neighboring gene proline rich 9 Neighboring gene small proline-rich protein 2A2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
enables structural constituent of skin epidermis ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 
involved_in keratinocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in peptide cross-linking ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cornified envelope ISO
Inferred from Sequence Orthology
more info
 
located_in cornified envelope ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic side of plasma membrane ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399507.1NP_001386436.1  loricrin

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000002
    Related
    ENSRNOP00000070322.3, ENSRNOT00000090155.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    180253674..180256572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)