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C3h20orf96 similar to human chromosome 20 open reading frame 96 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502684, updated on 10-Jul-2024

Summary

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Official Symbol
C3h20orf96provided by RGD
Official Full Name
similar to human chromosome 20 open reading frame 96provided by RGD
Primary source
RGD:1559448
See related
EnsemblRapid:ENSRNOG00000023721 AllianceGenome:RGD:1559448
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C20orf96 (chromosome 20 open reading frame 96). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 157.1) and Lung (RPKM 16.6) See more
Orthologs
human mouse all
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Genomic context

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See C3h20orf96 in Genome Data Viewer
Location:
3q41
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (161337376..161368007)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (140876987..140907711)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (147881847..147912447)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 12 Neighboring gene zinc finger CCHC-type containing 3 Neighboring gene defensin beta 23 Neighboring gene defensin beta 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C20orf96 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395620.1 → NP_001382549.1  uncharacterized protein C20orf96 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A0G2QC30
    Related
    ENSRNOP00000108278.1, ENSRNOT00000134300.1
    Conserved Domains (1) summary
    pfam15397
    Location:98 → 355
    DUF4618; Domain of unknown function (DUF4618)

RNA

  1. NR_172649.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    161337376..161368007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008762378.4 → XP_008760600.1  uncharacterized protein C20orf96 homolog isoform X2

    See identical proteins and their annotated locations for XP_008760600.1

    UniProtKB/TrEMBL
    F1M902, Q5XIK0
    Related
    ENSRNOP00000052282.5, ENSRNOT00000055415.6
    Conserved Domains (1) summary
    pfam15397
    Location:78 → 335
    DUF4618; Domain of unknown function (DUF4618)

  2. XM_006235249.5 → XP_006235311.1  uncharacterized protein C20orf96 homolog isoform X2

    See identical proteins and their annotated locations for XP_006235311.1

    UniProtKB/TrEMBL
    F1M902, Q5XIK0
    Conserved Domains (1) summary
    pfam15397
    Location:78 → 335
    DUF4618; Domain of unknown function (DUF4618)

  3. XM_006235247.5 → XP_006235309.1  uncharacterized protein C20orf96 homolog isoform X1

    See identical proteins and their annotated locations for XP_006235309.1

    UniProtKB/TrEMBL
    A6KHN5
    Conserved Domains (1) summary
    pfam15397
    Location:97 → 354
    DUF4618; Domain of unknown function (DUF4618)

  4. XM_063284406.1 → XP_063140476.1  uncharacterized protein C20orf96 homolog isoform X3

    UniProtKB/TrEMBL
    F1M902, Q5XIK0

  5. XM_006235248.5 → XP_006235310.1  uncharacterized protein C20orf96 homolog isoform X2

    See identical proteins and their annotated locations for XP_006235310.1

    UniProtKB/TrEMBL
    F1M902, Q5XIK0
    Conserved Domains (1) summary
    pfam15397
    Location:78 → 335
    DUF4618; Domain of unknown function (DUF4618)

  6. XM_039105728.2 → XP_038961656.1  uncharacterized protein C20orf96 homolog isoform X4

    Conserved Domains (1) summary
    pfam15397
    Location:27 → 284
    DUF4618; Domain of unknown function (DUF4618)
Nucleotide Protein Strain
Heading Accession and Version

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