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Vwde von Willebrand factor D and EGF domains [ Rattus norvegicus (Norway rat) ]

Gene ID: 502731, updated on 14-Nov-2024

Summary

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Official Symbol
Vwdeprovided by RGD
Official Full Name
von Willebrand factor D and EGF domainsprovided by RGD
Primary source
RGD:1561223
See related
EnsemblRapid:ENSRNOG00000024709 AllianceGenome:RGD:1561223
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561223
Summary
Predicted to enable calcium ion binding activity. Orthologous to human VWDE (von Willebrand factor D and EGF domains). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 5.8), Uterus (RPKM 2.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Vwde in Genome Data Viewer
Location:
4q21
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (42419676..42468992, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (41453573..41525421, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (39632555..39711430, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene L-lactate dehydrogenase A chain-like Neighboring gene transmembrane protein 106B Neighboring gene glucosamine-phosphate N-acetyltransferase 1, pseudogene 1 Neighboring gene taste receptor type 2 member 7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
von Willebrand factor D and EGF domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    42419676..42468992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286914.1 → XP_063142984.1  von Willebrand factor D and EGF domain-containing protein

    Related
    ENSRNOP00000104070.1, ENSRNOT00000173353.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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