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Prrt3 proline-rich transmembrane protein 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502873, updated on 2-Nov-2024

Summary

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Official Symbol
Prrt3provided by RGD
Official Full Name
proline-rich transmembrane protein 3provided by RGD
Primary source
RGD:1562419
See related
EnsemblRapid:ENSRNOG00000009863 AllianceGenome:RGD:1562419
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562419
Summary
Orthologous to human PRRT3 (proline rich transmembrane protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 62.2), Muscle (RPKM 20.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Prrt3 in Genome Data Viewer
Location:
4q42
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (148196800..148206086, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (146641173..146650487, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (145449574..145458900, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene interleukin 17 receptor E Neighboring gene interleukin 17 receptor C Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene ER membrane protein complex subunit 3 Neighboring gene FA complementation group D2 Neighboring gene FANCD2 opposite strand

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
proline-rich transmembrane protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309463.1 → NP_001296392.1  proline-rich transmembrane protein 3 precursor

    See identical proteins and their annotated locations for NP_001296392.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A6IBS6, D3ZWQ0
    Related
    ENSRNOP00000013154.6, ENSRNOT00000013154.9
    Conserved Domains (1) summary
    PHA03247
    Location:64 → 468
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    148196800..148206086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006237062.5 → XP_006237124.1  proline-rich transmembrane protein 3 isoform X1

    See identical proteins and their annotated locations for XP_006237124.1

    UniProtKB/TrEMBL
    A6IBS6, D3ZWQ0
    Conserved Domains (1) summary
    PHA03247
    Location:64 → 468
    PHA03247; large tegument protein UL36; Provisional

  2. XM_008763200.4 → XP_008761422.1  proline-rich transmembrane protein 3 isoform X1

    See identical proteins and their annotated locations for XP_008761422.1

    UniProtKB/TrEMBL
    A6IBS6, D3ZWQ0
    Conserved Domains (1) summary
    PHA03247
    Location:64 → 468
    PHA03247; large tegument protein UL36; Provisional

  3. XM_006237064.5 → XP_006237126.1  proline-rich transmembrane protein 3 isoform X1

    See identical proteins and their annotated locations for XP_006237126.1

    UniProtKB/TrEMBL
    A6IBS6, D3ZWQ0
    Conserved Domains (1) summary
    PHA03247
    Location:64 → 468
    PHA03247; large tegument protein UL36; Provisional

  4. XM_017592850.3 → XP_017448339.1  proline-rich transmembrane protein 3 isoform X1

    UniProtKB/TrEMBL
    A6IBS6, D3ZWQ0
    Conserved Domains (1) summary
    PHA03247
    Location:64 → 468
    PHA03247; large tegument protein UL36; Provisional

  5. XM_039108256.2 → XP_038964184.1  proline-rich transmembrane protein 3 isoform X2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001109350.1: Suppressed sequence

    Description
    NM_001109350.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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