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BSV_gp3 polyprotein [ Banana streak virus Acuminata Yunnan ]

Gene ID: 5141158, updated on 16-Aug-2018

Summary

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Gene symbol
BSV_gp3
Gene description
polyprotein
Locus tag
BSV_gp3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Banana streak virus Acuminata Yunnan (isolate: Acuminata Yunnan, nat-host: plaintain)
Lineage
Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus
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Genomic context

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Sequence:
NC_008018.1 (1591..7293)

NC_008018.1Genomic Context describing neighboring genes Neighboring gene ORFI Neighboring gene ORFII

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_008018.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the banana streak virus capsid protein and mapping of the immunodominant continuous B-cell epitopes to the surface-exposed N terminus. Vo JN, et al. J Gen Virol, 2016 Dec. PMID 27902336
  2. Molecular characterization of Banana streak virus isolate from Musa Acuminata in China. Zhuang J, et al. Virol Sin, 2011 Dec. PMID 22160939, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The immunodominant epitopes of capsid protein were mapped to the N terminus.
    Title: Characterization of the banana streak virus capsid protein and mapping of the immunodominant continuous B-cell epitopes to the surface-exposed N terminus.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
polyprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_008018.1 Reference assembly

    Range
    1591..7293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_605811.1 polyprotein [Banana streak virus Acuminata Yunnan]

    See identical proteins and their annotated locations for YP_605811.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q4FCW3
    Conserved Domains (6) summary
    cd01647
    Location:1325 → 1508
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    pfam00078
    Location:1353 → 1511
    RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    pfam00098
    Location:765 → 782
    zf-CCHC; Zinc knuckle
    cl09111
    Location:947 → 1080
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl11403
    Location:1098 → 1203
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases
    cl14782
    Location:1607 → 1735
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
Nucleotide Protein
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