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MAGEC2 MAGE family member C2 [ Homo sapiens (human) ]

Gene ID: 51438, updated on 28-Oct-2024

Summary

Official Symbol
MAGEC2provided by HGNC
Official Full Name
MAGE family member C2provided by HGNC
Primary source
HGNC:HGNC:13574
See related
Ensembl:ENSG00000046774 MIM:300468; AllianceGenome:HGNC:13574
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT10; HCA587; MAGEE1
Summary
This gene is a member of the MAGEC gene family. It is not expressed in normal tissues, except for testis, and is expressed in tumors of various histological types. This gene and the other MAGEC genes are clustered on chromosome Xq26-q27. [provided by RefSeq, Oct 2009]
Expression
Restricted expression toward testis (RPKM 15.6) See more
Orthologs
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Genomic context

See MAGEC2 in Genome Data Viewer
Location:
Xq27.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (142202342..142205290, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (140511041..140513989, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (141290128..141293076, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MAGE family member C2 pseudogene Neighboring gene MAGE family member C3 pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:141291591-141292790 Neighboring gene MAGE family member C3 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:141320934-141321725 Neighboring gene zinc finger MYM-type containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:141478562-141479062 Neighboring gene RNA, 5S ribosomal pseudogene 516

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
melanoma-associated antigen C2
Names
MAGE-C2 antigen
MAGE-E1 antigen
cancer/testis antigen 10
hepatocellular cancer antigen 587
hepatocellular carcinoma-associated antigen 587
melanoma antigen family C, 2
melanoma antigen family C2
melanoma antigen, family E, 1, cancer/testis specific

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_015872.1 RefSeqGene

    Range
    5001..7949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_016249.4NP_057333.1  melanoma-associated antigen C2

    See identical proteins and their annotated locations for NP_057333.1

    Status: REVIEWED

    Source sequence(s)
    AF116194, BC005891, BC013318, BM548987, BP370466
    Consensus CDS
    CCDS14678.1
    UniProtKB/Swiss-Prot
    Q5JZ00, Q96D45, Q9P1M6, Q9P1M7, Q9UBF1
    UniProtKB/TrEMBL
    Q6IAI7
    Related
    ENSP00000354660.2, ENST00000247452.4
    Conserved Domains (1) summary
    pfam01454
    Location:229308
    MAGE; MAGE family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    142202342..142205290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    140511041..140513989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)