U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

D6Ertd527e DNA segment, Chr 6, ERATO Doi 527, expressed [ Mus musculus (house mouse) ]

Gene ID: 52372, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
D6Ertd527eprovided by MGI
Official Full Name
DNA segment, Chr 6, ERATO Doi 527, expressedprovided by MGI
Primary source
MGI:MGI:1261919
See related
Ensembl:ENSMUSG00000090891 AllianceGenome:MGI:1261919
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in ovary adult (RPKM 4.0) and testis adult (RPKM 0.4) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See D6Ertd527e in Genome Data Viewer
Location:
6 D1; 6 37.9 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87081729..87089979)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87097125..87113003)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16547 Neighboring gene glutamine fructose-6-phosphate transaminase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87025148-87025378 Neighboring gene predicted gene, 52909 Neighboring gene STARR-positive B cell enhancer mm9_chr6:87069488-87069789 Neighboring gene predicted gene, 53292 Neighboring gene STARR-positive B cell enhancer ABC_E4842 Neighboring gene anthrax toxin receptor 1 Neighboring gene STARR-seq mESC enhancer starr_16552 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87178031-87178232 Neighboring gene predicted gene, 38851

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo emergence, existence, and demise of a protein-coding gene in murids. Petrzilek J, et al. BMC Biol, 2022 Dec 8. PMID 36482406, Free PMC Article
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_176826.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162465
    Related
    ENSMUST00000204927.2

  2. NR_176827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162465
    Related
    ENSMUST00000170124.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87081729..87089979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001167937.1: Suppressed sequence

    Description
    NM_001167937.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.

  2. NM_001167938.1: Suppressed sequence

    Description
    NM_001167938.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools