COPG2IT1 COPG2 imprinted transcript 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: COPG2IT1provided by HGNC
Official Full Name: COPG2 imprinted transcript 1provided by HGNC
Primary source: HGNC:HGNC:2238
See related: MIM:610581; AllianceGenome:HGNC:2238
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: CIT1; COPG2AS; NCRNA00170; DKFZP761N09121
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Genomic context

Location:: 7q32.2

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	7	NC_000007.14 (130543453..130546900)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	7	NC_060931.1 (131857155..131860597)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	7 (PATCHES)	NW_003871065.1 (222680..226122)

Chromosome 7 - NC_000007.14 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

COPG2IT1, encoding an antisense transcript in COPG2 intron 20, is imprinted, with preferential expression from the paternal allele in fetal tissues.
Title: The novel gene, gamma2-COP (COPG2), in the 7q32 imprinted domain escapes genomic imprinting.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

T16134 (e-PCR)
- UniSTS:69486

RH66577 (e-PCR)
- UniSTS:32147

D7S2945 (e-PCR)
- UniSTS:2489

Other Names

COPG2 antisense RNA (non-protein coding)
COPG2 imprinted transcript 1 (non-protein coding)
Copg2 intronic transcript 1
coatomer protein complex, subunit gamma 2, intronic transcript 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.