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Zfp973 zinc finger protein 973 [ Mus musculus (house mouse) ]

Gene ID: 545490, updated on 8-Feb-2024

Summary

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Official Symbol
Zfp973provided by MGI
Official Full Name
zinc finger protein 973provided by MGI
Primary source
MGI:MGI:3615331
See related
Ensembl:ENSMUSG00000078879 AllianceGenome:MGI:3615331
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm14306; Gm14436; 6230416C02Rik
Summary
Orthologous to human ZNF699 (zinc finger protein 699). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 5.7), cerebellum adult (RPKM 4.8) and 25 other tissues See more
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Genomic context

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See Zfp973 in Genome Data Viewer
Location:
2 H4; 2 99.16 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (176362315..176372883)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (176670522..176681090)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr2:176131206-176131506 Neighboring gene zinc finger protein 967 Neighboring gene predicted gene 14308 Neighboring gene STARR-positive B cell enhancer mm9_chr2:176454990-176455291 Neighboring gene predicted gene 14305 Neighboring gene zinc finger protein 937 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
KRAB box and zinc finger, C2H2 type domain containing protein-like
Names
novel KRAB box and zinc finger, C2H2 type domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242943.2 → NP_001229872.1  KRAB box and zinc finger, C2H2 type domain containing protein-like

    See identical proteins and their annotated locations for NP_001229872.1

    Status: VALIDATED

    Source sequence(s)
    CR354442
    Consensus CDS
    CCDS84596.1
    UniProtKB/TrEMBL
    A2BE20
    Related
    ENSMUSP00000104613.3, ENSMUST00000108985.9
    Conserved Domains (5) summary
    smart00349
    Location:23 → 64
    KRAB; krueppel associated box
    COG5048
    Location:43 → 302
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:180 → 200
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:23 → 62
    KRAB; KRAB box
    pfam13465
    Location:192 → 217
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    176362315..176372883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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