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Spata31f1b spermatogenesis associated 31 subfamily F member 1B [ Mus musculus (house mouse) ]

Gene ID: 545611, updated on 2-Nov-2024

Summary

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Official Symbol
Spata31f1bprovided by MGI
Official Full Name
spermatogenesis associated 31 subfamily F member 1Bprovided by MGI
Primary source
MGI:MGI:3701946
See related
Ensembl:ENSMUSG00000094066 AllianceGenome:MGI:3701946
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam205a; Gm13298; Fam205a2; Spata31f1-2
Summary
Predicted to be located in membrane. Orthologous to several human genes including SPATA31F1 (SPATA31 subfamily F member 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 15.3), cortex adult (RPKM 3.7) and 6 other tissues See more
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Genomic context

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See Spata31f1b in Genome Data Viewer
Location:
4 A5; 4 22.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42522437..42537578, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42522437..42537578, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3883 Neighboring gene predicted gene, 53189 Neighboring gene predicted gene, 52694 Neighboring gene C-C motif chemokine ligand 19, pseudogene 2 Neighboring gene protein FAM205A-2-like Neighboring gene C-C motif chemokine ligand 21E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 31F1B; protein SPATA31F1-2
Names
Transmembrane protein C9orf144B homolog
family with sequence similarity 205, member A2
protein FAM205A
protein FAM205A-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085530.1 → NP_001078999.1  spermatogenesis-associated protein 31F1B isoform 1

    See identical proteins and their annotated locations for NP_001078999.1

    Status: VALIDATED

    Source sequence(s)
    BX666061
    UniProtKB/Swiss-Prot
    A2APU8, C0HKD1, C0HKD2, C0HKD3
    Related
    ENSMUSP00000136864.2, ENSMUST00000180201.2
    Conserved Domains (3) summary
    pfam14650
    Location:416 → 601
    FAM75; FAM75 family
    pfam15371
    Location:52 → 138
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1093 → 1246
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  2. NM_001355395.1 → NP_001342324.1  spermatogenesis-associated protein 31F1B isoform 2

    Status: VALIDATED

    Source sequence(s)
    BX666061
    Conserved Domains (2) summary
    pfam14650
    Location:335 → 520
    FAM75; FAM75 family
    pfam15371
    Location:3 → 57
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    42522437..42537578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253677.1 → XP_030109537.1  protein SPATA31F1-2 isoform X3

    Conserved Domains (3) summary
    pfam14650
    Location:391 → 576
    FAM75; FAM75 family
    pfam15371
    Location:36 → 113
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1068 → 1221
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  2. XM_036164248.1 → XP_036020141.1  protein SPATA31F1-2 isoform X1

    Conserved Domains (2) summary
    pfam14650
    Location:403 → 588
    FAM75; FAM75 family
    pfam15371
    Location:39 → 125
    DUF4599; Domain of unknown function (DUF4599)

  3. XM_011250070.3 → XP_011248372.1  protein SPATA31F1-2 isoform X2

    See identical proteins and their annotated locations for XP_011248372.1

    Conserved Domains (3) summary
    pfam14650
    Location:397 → 582
    FAM75; FAM75 family
    pfam15371
    Location:45 → 119
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1074 → 1227
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  4. XM_006538093.1 → XP_006538156.1  protein SPATA31F1-2 isoform X2

    See identical proteins and their annotated locations for XP_006538156.1

    Conserved Domains (3) summary
    pfam14650
    Location:397 → 582
    FAM75; FAM75 family
    pfam15371
    Location:45 → 119
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1074 → 1227
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0HKD1.1 GenPept UniProtKB/Swiss-Prot:C0HKD1

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