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Gm5934 predicted gene 5934 [ Mus musculus (house mouse) ]

Gene ID: 546272, updated on 2-Nov-2024

Summary

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Official Symbol
Gm5934provided by MGI
Official Full Name
predicted gene 5934provided by MGI
Primary source
MGI:MGI:3643862
See related
Ensembl:ENSMUSG00000084063 AllianceGenome:MGI:3643862
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG546272
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm5934 in Genome Data Viewer
Location:
X A2; X 17.59 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (24340547..24365402, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (24474308..24499163, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene testin LIM domain protein like 2 Neighboring gene STARR-seq mESC enhancer starr_46930 Neighboring gene STARR-seq mESC enhancer starr_46931 Neighboring gene STARR-seq mESC enhancer starr_46932 Neighboring gene STARR-seq mESC enhancer starr_46933 Neighboring gene STARR-seq mESC enhancer starr_46934 Neighboring gene STARR-seq mESC enhancer starr_46935 Neighboring gene X-linked lymphocyte-regulated protein PM1-like Neighboring gene predicted gene 4297 Neighboring gene predicted gene, 41894

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC546272
Names
novel Xlr-related, meiosis regulated (Xmr) family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100444.2 → NP_001093914.1  uncharacterized protein LOC546272

    Status: PREDICTED

    Source sequence(s)
    AL671211
    Consensus CDS
    CCDS53020.1
    UniProtKB/TrEMBL
    D3Z4U6
    Related
    ENSMUSP00000113623.2, ENSMUST00000120734.2
    Conserved Domains (1) summary
    pfam04803
    Location:130 → 209
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    24340547..24365402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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