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S spike protein [ Duck coronavirus ]

Gene ID: 55060248, updated on 29-Jul-2022

Summary

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Gene symbol
S
Gene description
spike protein
Locus tag
HO267_gp03
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Duck coronavirus (isolate: DK/GD/27/2014, nat-host: duck)
Lineage
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus
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Genomic context

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Sequence:
NC_048214.1 (20318..23893)

NC_048214.1Genomic Context describing neighboring genes Neighboring gene ORF1ab polyprotein Neighboring gene ORF1a polyprotein Neighboring gene 3a protein Neighboring gene 3b protein Neighboring gene 3c protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048214.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic Analysis and Surveillance of the Coronavirus Dominant in Ducks in China. Zhuang QY, et al. PLoS One, 2015. PMID 26053682, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
spike protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_048214.1 Reference assembly

    Range
    20318..23893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009825008.1 spike protein [Duck coronavirus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0F6YS09
    Conserved Domains (2) summary
    cd21698
    Location:791 → 870
    CoV_Spike_S1-S2_S2; heptad repeat 1 [structural motif]
    cl40439
    Location:415 → 1112
    CoV_Spike_S1-S2_S2; S1/S2 cleavage region and the S2 fusion subunit of coronavirus spike (S) proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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