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LOC5517926 endothelial PAS domain-containing protein 1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5517926, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5517926
Gene description
endothelial PAS domain-containing protein 1
Locus tag
NEMVEDRAFT_v1g161959
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5517926 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (5937026..5948074, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834388.1 (275129..286165, complement)

Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene deleted in lung and esophageal cancer protein 1 Neighboring gene uncharacterized LOC5517925 Neighboring gene KAT8 regulatory NSL complex subunit 1 Neighboring gene pinopsin-like Neighboring gene uncharacterized LOC5517927

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterisation, evolution and expression of hypoxia-inducible factor in Aurelia sp.1. Wang G, et al. PLoS One, 2014. PMID 24926666, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endothelial PAS domain-containing protein 1
Names
hypoxia inducible factor
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064035.1 Reference jaNemVect1.1

    Range
    5937026..5948074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032362465.2 → XP_032218356.1  endothelial PAS domain-containing protein 1

    UniProtKB/TrEMBL
    A0A076FS22
    Conserved Domains (4) summary
    smart00091
    Location:94 → 151
    PAS; PAS domain
    cd11433
    Location:14 → 71
    bHLH-PAS_HIF; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor (HIF) family
    pfam08778
    Location:637 → 667
    HIF-1a_CTAD; HIF-1 alpha C terminal transactivation domain
    pfam14598
    Location:267 → 368
    PAS_11; PAS domain
Nucleotide Protein
Heading Accession and Version

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