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LOC5518243 cadherin-23 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5518243, updated on 6-Jun-2024

Summary

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Gene symbol
LOC5518243
Gene description
cadherin-23
Locus tag
NEMVEDRAFT_v1g30053
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
Also known as
hedgling
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Genomic context

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See LOC5518243 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
37
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 1 NC_064034.1 (20888291..20918609, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834391.1 (25476..56575, complement)

Chromosome 1 - NC_064034.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylarginine hydrolase Tri1 Neighboring gene DNA-(apurinic or apyrimidinic site) endonuclease 2 Neighboring gene adhesive plaque matrix protein Neighboring gene uncharacterized LOC5518230 Neighboring gene uncharacterized LOC125570088

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The evolutionary origin of hedgehog proteins. Adamska M, et al. Curr Biol, 2007 Oct 9. PMID 17925209

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-23
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064034.1 Reference jaNemVect1.1

    Range
    20888291..20918609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032362886.2 → XP_032218777.2  cadherin-23 isoform X1

    UniProtKB/TrEMBL
    A9UIA7

  2. XM_048728329.1 → XP_048584286.1  cadherin-23 isoform X1

    UniProtKB/TrEMBL
    A9UIA7

  3. XM_048728331.1 → XP_048584288.1  cadherin-23 isoform X2

    UniProtKB/TrEMBL
    A9UIA7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials