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Methig1 methyltransferase hypoxia inducible domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 554292, updated on 28-Oct-2024

Summary

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Official Symbol
Methig1provided by MGI
Official Full Name
methyltransferase hypoxia inducible domain containing 1provided by MGI
Primary source
MGI:MGI:3845761
See related
Ensembl:ENSMUSG00000093789 AllianceGenome:MGI:3845761
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
UbiE-YGHL1; Mettl7a2Higd1c; Mettl7a2higd1c; Mettl7a2-Higd1c
Expression
Biased expression in kidney adult (RPKM 22.3), lung adult (RPKM 13.6) and 8 other tissues See more
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Genomic context

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See Methig1 in Genome Data Viewer
Location:
15 F1; 15 56.27 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (100251081..100282316)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (100353200..100384435)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53910 Neighboring gene thiol methyltransferase 1A1 Neighboring gene thiol methyltransferase 1A3 Neighboring gene thiol methyltransferase 1A2 Neighboring gene HIG1 domain family, member 1C Neighboring gene predicted gene, 53911 Neighboring gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 Neighboring gene STARR-positive B cell enhancer ABC_E4149 Neighboring gene RIKEN cDNA 5330439K02 gene Neighboring gene predicted gene 5475 Neighboring gene STARR-positive B cell enhancer mm9_chr15:100274003-100274304 Neighboring gene STARR-seq mESC enhancer starr_39750 Neighboring gene LETM1 domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Readthrough Methig1

Included genes: Higd1c, Tmt1a2

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
methyltransferase hypoxia inducible domain containing 1
Names
Mettl7a2-Higd1c readthrough transcript
UbiE-YGHL1 fusion protein
UbiE2-Hig1-4 fusion protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024672.3 → NP_001019843.1  methyltransferase hypoxia inducible domain containing 1

    See identical proteins and their annotated locations for NP_001019843.1

    Status: PROVISIONAL

    Source sequence(s)
    AK144032
    UniProtKB/TrEMBL
    Q76I26
    Related
    ENSMUSP00000075098.6, ENSMUST00000075675.7
    Conserved Domains (2) summary
    pfam04588
    Location:194 → 242
    HIG_1_N; Hypoxia induced protein conserved region
    pfam08241
    Location:75 → 166
    Methyltransf_11; Methyltransferase domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    100251081..100282316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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