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CAND1 cullin associated and neddylation dissociated 1 [ Homo sapiens (human) ]

Gene ID: 55832, updated on 2-Nov-2024

Summary

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Official Symbol
CAND1provided by HGNC
Official Full Name
cullin associated and neddylation dissociated 1provided by HGNC
Primary source
HGNC:HGNC:30688
See related
Ensembl:ENSG00000111530 MIM:607727; AllianceGenome:HGNC:30688
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TIP120; TIP120A
Summary
This gene encodes an essential regulator of Cullin-RING ubiquitin ligases, which are in involved in ubiquitinylation of proteins degraded by the Ub proteasome system. The encoded protein binds to unneddylated cullin-RING box protein complexes and acts as an inhibitor of cullin neddylation and of Skp1, cullin, and F box ubiquitin ligase complex assembly and activity. In mammalian cell culture, this protein predominantly localizes to the cytoplasm. Knockdown of this gene in preadipocytes results in blocked adipogenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]
Expression
Ubiquitous expression in brain (RPKM 22.8), testis (RPKM 22.7) and 25 other tissues See more
Orthologs
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Genomic context

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See CAND1 in Genome Data Viewer
Location:
12q14.3-q15
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67269358..67319953)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67248745..67299478)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (67663138..67713733)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RAB11A, member RAS oncogene family pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr12:67581835-67582336 Neighboring gene NANOG hESC enhancer GRCh37_chr12:67630932-67631461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6624 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:67663253-67663904 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:67671759-67672260 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:67672261-67672760 Neighboring gene glycoprotein alpha-galactosyltransferase 2, pseudogene Neighboring gene uncharacterized LOC124902957 Neighboring gene NANOG hESC enhancer GRCh37_chr12:67734433-67734949 Neighboring gene mitochondrial ribosomal protein L40 pseudogene 1 Neighboring gene uncharacterized LOC105369813

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Structural and mechanistic insights into the CAND1-mediated SCF substrate receptor exchange. Shaaban M, et al. Mol Cell, 2023 Jul 6. PMID 37339624
  2. Induced expression, localization, and chromosome mapping of a gene for the TBP-interacting protein 120A. Yogosawa S, et al. Biochem Biophys Res Commun, 1999 Dec 9. PMID 10581176
  3. miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression. Murata T, et al. Prostate Cancer Prostatic Dis, 2010 Dec. PMID 20820187
  4. CAND1-dependent control of cullin 1-RING Ub ligases is essential for adipogenesis. Dubiel D, et al. Biochim Biophys Acta, 2013 May. PMID 23328082
  5. Disclosing the Interaction of Carbonic Anhydrase IX with Cullin-Associated NEDD8-Dissociated Protein 1 by Molecular Modeling and Integrated Binding Measurements. Buonanno M, et al. ACS Chem Biol, 2017 Jun 16. PMID 28388044

See all (250) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ASCC3 promotes the immunosuppression and progression of non-small cell lung cancer by impairing the type I interferon response via CAND1-mediated ubiquitination inhibition of STAT3.
    Title: ASCC3 promotes the immunosuppression and progression of non-small cell lung cancer by impairing the type I interferon response via CAND1-mediated ubiquitination inhibition of STAT3.
  2. Structural and mechanistic insights into the CAND1-mediated SCF substrate receptor exchange.
    Title: Structural and mechanistic insights into the CAND1-mediated SCF substrate receptor exchange.
  3. Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
    Title: Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
  4. Cullin-associated and neddylation-dissociated 1 protein (CAND1) governs cardiac hypertrophy and heart failure partially through regulating calcineurin degradation.
    Title: Cullin-associated and neddylation-dissociated 1 protein (CAND1) governs cardiac hypertrophy and heart failure partially through regulating calcineurin degradation.
  5. CAND1 regulates lunapark for the proper tubular network of the endoplasmic reticulum.
    Title: CAND1 regulates lunapark for the proper tubular network of the endoplasmic reticulum.
  6. miR-33a and CAND1 played an important role in lung cancer proliferation and cell migration
    Title: miR-33a inhibits cell proliferation and invasion by targeting CAND1 in lung cancer.
  7. describe the identification of the structural determinants responsible for the CA IX/CAND1 interaction
    Title: Disclosing the Interaction of Carbonic Anhydrase IX with Cullin-Associated NEDD8-Dissociated Protein 1 by Molecular Modeling and Integrated Binding Measurements.
  8. Data show that the differentiation of LiSa-2 preadipocytes is associated with an increase of cullin-associated and neddylation-dissociated 1 (CAND1), COP9 signalosome (CSN), neddylated cullin 3 (Cul3) and the BTB protein Keap1.
    Title: CAND1 exchange factor promotes Keap1 integration into cullin 3-RING ubiquitin ligase during adipogenesis.
  9. The Epstein-Barr virus protein BPLF1, is targeted to cullin-RING ubiquitin ligases (CRLs) via the interaction of the conserved helix-2 with helix-23 of cullins, at a site involved in electrostatic interaction with CAND1.
    Title: Herpes virus deneddylases interrupt the cullin-RING ligase neddylation cycle by inhibiting the binding of CAND1.
  10. We demonstrate that the accumulation of p27 is associated with an increase of CAND1 and a decrease of Skp2 during adipogenesis of human LiSa-2 preadipocytes. CAND1 knockdown reduces p27 and blocks adipogenesis.
    Title: CAND1-dependent control of cullin 1-RING Ub ligases is essential for adipogenesis.
Submit: New GeneRIF Correction See all GeneRIFs (21)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Common variation near ROBO2 is associated with expressive vocabulary in infancy.
EBI GWAS Catalog
Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ10114, FLJ10929, FLJ38691, FLJ90441, KIAA0829, DKFZp434M1414

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in SCF complex assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in cell differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of catalytic activity IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of RNA polymerase II transcription preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
  
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
  
part_of cullin-RING ubiquitin ligase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in extracellular exosome HDA PubMed 
located_in extracellular region TAS
Traceable Author Statement
more info
  
located_in ficolin-1-rich granule lumen TAS
Traceable Author Statement
more info
  
located_in membrane HDA PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
located_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in secretory granule lumen TAS
Traceable Author Statement
more info
  
part_of ubiquitin ligase complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
cullin-associated NEDD8-dissociated protein 1
Names
TBP-interacting protein of 120 kDa A
p120 CAND1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051239.2 RefSeqGene

    Range
    5002..55597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001329674.2 → NP_001316603.1  cullin-associated NEDD8-dissociated protein 1 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AA766567, AC012518, AC078983
    UniProtKB/TrEMBL
    A8K8U1
    Conserved Domains (3) summary
    sd00044
    Location:793 → 823
    HEAT; HEAT repeat [structural motif]
    pfam08623
    Location:1016 → 1178
    TIP120; TATA-binding protein interacting (TIP20)
    pfam13513
    Location:125 → 178
    HEAT_EZ; HEAT-like repeat

  2. NM_001329675.2 → NP_001316604.1  cullin-associated NEDD8-dissociated protein 1 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AA766567, AC012518, AC078983
    UniProtKB/TrEMBL
    A8K8U1
    Conserved Domains (3) summary
    sd00044
    Location:793 → 823
    HEAT; HEAT repeat [structural motif]
    pfam08623
    Location:1016 → 1178
    TIP120; TATA-binding protein interacting (TIP20)
    pfam13513
    Location:125 → 178
    HEAT_EZ; HEAT-like repeat

  3. NM_001329676.2 → NP_001316605.1  cullin-associated NEDD8-dissociated protein 1 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AA766567, AC012518, AC078983
    UniProtKB/TrEMBL
    A8K8U1

  4. NM_018448.5 → NP_060918.2  cullin-associated NEDD8-dissociated protein 1 isoform 1

    See identical proteins and their annotated locations for NP_060918.2

    Status: REVIEWED

    Source sequence(s)
    AB020636, AC078983, AL136810, BQ024785, DB064887
    Consensus CDS
    CCDS8977.1
    UniProtKB/Swiss-Prot
    B2RAU3, O94918, Q6PIY4, Q86VP6, Q8NDJ4, Q96JZ9, Q96T19, Q9BTC4, Q9H0G2, Q9P0H7, Q9UF85
    UniProtKB/TrEMBL
    A8K8U1
    Related
    ENSP00000442318.1, ENST00000545606.6
    Conserved Domains (3) summary
    sd00044
    Location:817 → 847
    HEAT; HEAT repeat [structural motif]
    pfam08623
    Location:1040 → 1202
    TIP120; TATA-binding protein interacting (TIP20)
    pfam13513
    Location:150 → 202
    HEAT_EZ; HEAT-like repeat

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    67269358..67319953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    67248745..67299478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86VP6.2 GenPept UniProtKB/Swiss-Prot:Q86VP6

Gene LinkOut

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