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rad54l2 RAD54 like 2 [ Danio rerio (zebrafish) ]

Gene ID: 558947, updated on 18-Sep-2024

Summary

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Official Symbol
rad54l2provided by ZNC
Official Full Name
RAD54 like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3097
See related
Ensembl:ENSDARG00000063031 AllianceGenome:ZFIN:ZDB-GENE-030131-3097
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc27a09; wu:fc27a09; si:dkey-42i9.10
Summary
Predicted to enable ATP binding activity. Predicted to be active in nucleus. Orthologous to human RAD54L2 (RAD54 like 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rad54l2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (10607041..10639026)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (10577208..10609367)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene shisa family member 10, tandem duplicate 4 Neighboring gene BRCA1 associated deubiquitinase 1 Neighboring gene cytochrome b561 family, member D2 Neighboring gene Ras association domain family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
helicase ARIP4
XP_005174062.1
XP_005174063.1
XP_687332.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    10607041..10639026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_682240.10 → XP_687332.3  helicase ARIP4 isoform X2

    See identical proteins and their annotated locations for XP_687332.3

    UniProtKB/TrEMBL
    A0A8N7TAQ7, F1QKJ5, F1R3L6
    Related
    ENSDARP00000121746.2, ENSDART00000147975.3
    Conserved Domains (3) summary
    cd00046
    Location:310 → 502
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:284 → 638
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:720 → 851
    Helicase_C; Helicase conserved C-terminal domain

  2. XM_005174006.5 → XP_005174063.1  helicase ARIP4 isoform X2

    See identical proteins and their annotated locations for XP_005174063.1

    UniProtKB/TrEMBL
    A0A8N7TAQ7, F1QKJ5, F1R3L6
    Conserved Domains (3) summary
    cd00046
    Location:310 → 502
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:284 → 638
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:720 → 851
    Helicase_C; Helicase conserved C-terminal domain

  3. XM_005174005.5 → XP_005174062.1  helicase ARIP4 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BLB3
    Conserved Domains (3) summary
    cd00046
    Location:328 → 520
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:302 → 656
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:738 → 869
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein Strain
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