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si:ch211-214j24.15 si:ch211-214j24.15 [ Danio rerio (zebrafish) ]

Gene ID: 558954, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-214j24.15provided by ZNC
Official Full Name
si:ch211-214j24.15provided by ZNC
Primary source
ZFIN:ZDB-GENE-110914-85
See related
Ensembl:ENSDARG00000063481 AllianceGenome:ZFIN:ZDB-GENE-110914-85
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable GTP binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-214j24.15 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5304208..5317013, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5298545..5302895, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 91b Neighboring gene uncharacterized LOC137491504 Neighboring gene clathrin coat assembly protein AP180 Neighboring gene clathrin coat assembly protein AP180-like Neighboring gene si:ch211-214j24.10 Neighboring gene O-sialoglycoprotein endopeptidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GTPase IMAP family member 8; uncharacterized protein LOC558954

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    5304208..5317013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017355452.3 → XP_017210941.2  GTPase IMAP family member 8

    UniProtKB/TrEMBL
    A0A8M6Z6A0, H0WEU1
    Related
    ENSDARP00000125370.1, ENSDART00000150867.2
    Conserved Domains (2) summary
    cd01852
    Location:244 → 439
    AIG1; AvrRpt2-Induced Gene 1 (AIG1)
    cl21455
    Location:15 → 209
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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