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NXF3 nuclear RNA export factor 3 [ Homo sapiens (human) ]

Gene ID: 56000, updated on 5-Mar-2024

Summary

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Official Symbol
NXF3provided by HGNC
Official Full Name
nuclear RNA export factor 3provided by HGNC
Primary source
HGNC:HGNC:8073
See related
Ensembl:ENSG00000147206 MIM:300316; AllianceGenome:HGNC:8073
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene is one member of a family of nuclear RNA export factor genes. Common domain features of this family are a noncanonical RNP-type RNA-binding domain (RBD), 4 leucine-rich repeats (LRRs), a nuclear transport factor 2 (NTF2)-like domain that allows heterodimerization with NTF2-related export protein-1 (NXT1), and a ubiquitin-associated domain that mediates interactions with nucleoporins. The LRRs and NTF2-like domains are required for export activity. Alternative splicing seems to be a common mechanism in this gene family. The encoded protein of this gene has shortened LRR and ubiquitin-associated domains and its RDB is unable to bind RNA. It is located in the nucleoplasm but is not associated with either the nuclear envelope or the nucleolus. [provided by RefSeq, Jul 2008]
Expression
Biased expression in testis (RPKM 42.7), gall bladder (RPKM 7.2) and 1 other tissue See more
Orthologs
mouse all
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Genomic context

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Location:
Xq22.1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (103075810..103093143, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (101520737..101538070, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (102330738..102348071, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NUDT19 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 49 Neighboring gene brain expressed X-linked 1 Neighboring gene zinc finger protein 770 pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:102358711-102359380 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:102438681-102439434 Neighboring gene CRISPRi-validated cis-regulatory element chrX.1663 Neighboring gene ribosomal protein SA pseudogene 59 Neighboring gene brain expressed X-linked 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. AF119895 regulates NXF3 expression to promote migration and invasion of hepatocellular carcinoma through an interaction with miR-6508-3p. Zeng T, et al. Exp Cell Res, 2018 Feb 1. PMID 29274323
  2. Formation of a Tap/NXF1 homotypic complex is mediated through the amino-terminal domain of Tap and enhances interaction with nucleoporins. Matzat LH, et al. Mol Biol Cell, 2008 Jan. PMID 17978099, Free PMC Article
  3. Two closely related human nuclear export factors utilize entirely distinct export pathways. Yang J, et al. Mol Cell, 2001 Aug. PMID 11545741
  4. NXF5, a novel member of the nuclear RNA export factor family, is lost in a male patient with a syndromic form of mental retardation. Jun L, et al. Curr Biol, 2001 Sep 18. PMID 11566096
  5. TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture. Herold A, et al. Mol Cell Biol, 2000 Dec. PMID 11073998, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. observations collectively demonstrate that AF119895 modulates the repression of NXF3 by binding to miR-6508-3p
    Title: AF119895 regulates NXF3 expression to promote migration and invasion of hepatocellular carcinoma through an interaction with miR-6508-3p.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in mRNA export from nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in poly(A)+ mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear RNA export factor complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear RNA export factor complex IPI
Inferred from Physical Interaction
more info
 PubMed 
part_of nuclear RNA export factor complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
nuclear RNA export factor 3
Names
TAP-like protein 3
TAPL-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012572.1 RefSeqGene

    Range
    4952..22285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_022052.2 → NP_071335.1  nuclear RNA export factor 3

    See identical proteins and their annotated locations for NP_071335.1

    Status: REVIEWED

    Source sequence(s)
    AJ277527, Z75746
    Consensus CDS
    CCDS14503.1
    UniProtKB/Swiss-Prot
    B4DYS7, Q5H9I1, Q9H1A9, Q9H4D5
    Related
    ENSP00000378504.3, ENST00000395065.8
    Conserved Domains (3) summary
    cd00780
    Location:341 → 496
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    sd00035
    Location:218 → 260
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:110 → 192
    Tap-RNA_bind; Tap, RNA-binding

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    103075810..103093143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    101520737..101538070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9H4D5.1 GenPept UniProtKB/Swiss-Prot:Q9H4D5

Gene LinkOut

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