U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cep85 centrosomal protein 85 [ Danio rerio (zebrafish) ]

Gene ID: 561994, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
cep85provided by ZNC
Official Full Name
centrosomal protein 85provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1998
See related
Ensembl:ENSDARG00000060215 AllianceGenome:ZFIN:ZDB-GENE-030131-1998
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb94b04; wu:fb94b04; si:ch211-11i5.2
Summary
Predicted to be active in centrosome. Orthologous to human CEP85 (centrosomal protein 85). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cep85 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (41684984..41714948, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (41734949..41773174, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene ATPase secretory pathway Ca2+ transporting 1 Neighboring gene UBX domain protein 11 Neighboring gene uncharacterized LOC137487960 Neighboring gene si:dkey-199f5.8 Neighboring gene metadherin b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of DNA methylation reveals a partial reprogramming of the Müller glia genome during retina regeneration. Powell C, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24248357, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 21; centrosomal protein of 85 kDa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    41684984..41714948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292585.4 → XP_009290860.1  centrosomal protein of 85 kDa isoform X2

    UniProtKB/TrEMBL
    A0A8M3AJE9
    Conserved Domains (3) summary
    pfam04949
    Location:389 → 490
    Transcrip_act; Transcriptional activator
    pfam13870
    Location:319 → 509
    DUF4201; Domain of unknown function (DUF4201)
    cl12013
    Location:424 → 565
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  2. XM_685394.10 → XP_690486.4  centrosomal protein of 85 kDa isoform X1

    UniProtKB/TrEMBL
    A0A8N7UVU8, E9QBC3
    Related
    ENSDARP00000119133.1, ENSDART00000138798.3
    Conserved Domains (3) summary
    pfam04949
    Location:389 → 490
    Transcrip_act; Transcriptional activator
    pfam13870
    Location:319 → 509
    DUF4201; Domain of unknown function (DUF4201)
    cl12013
    Location:424 → 565
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  3. XM_068214214.1 → XP_068070315.1  centrosomal protein of 85 kDa isoform X3

  4. XM_005158261.4 → XP_005158318.1  centrosomal protein of 85 kDa isoform X3

    See identical proteins and their annotated locations for XP_005158318.1

    UniProtKB/TrEMBL
    A0A8M2B4L3
    Conserved Domains (2) summary
    pfam13870
    Location:240 → 430
    DUF4201; Domain of unknown function (DUF4201)
    cl12013
    Location:345 → 486
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools