ftr64 finTRIM family, member 64 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ftr64provided by ZNC
Official Full Name: finTRIM family, member 64provided by ZNC
Primary source: ZFIN:ZDB-GENE-090508-8
See related: Ensembl:ENSDARG00000101514 AllianceGenome:ZFIN:ZDB-GENE-090508-8
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ftr56
Summary: Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (71974711..71983522, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (70704351..70713162, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: finTRIM family, member 64

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001327814.1 → NP_001314743.1 finTRIM family, member 64

Status: VALIDATED

Source sequence(s)

CU651668

UniProtKB/TrEMBL

A0A0R4INJ4, A0A8M1P924

Related

ENSDARP00000137899.1, ENSDART00000169130.2

Conserved Domains (5) summary

pfam00643
Location:147 → 185

zf-B_box; B-box zinc finger

pfam15227
Location:15 → 57

zf-C3HC4_4; zinc finger of C3HC4-type, RING

pfam15619
Location:136 → 286

Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

cd16040
Location:371 → 551

SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

cl02488
Location:175 → 296

SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...