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Znrd2 zinc ribbon domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 56390, updated on 2-Nov-2024

Summary

Official Symbol
Znrd2provided by MGI
Official Full Name
zinc ribbon domain containing 2provided by MGI
Primary source
MGI:MGI:1913482
See related
Ensembl:ENSMUSG00000079478 AllianceGenome:MGI:1913482
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C184L; Sssca1; 1500016H19Rik
Summary
Is expressed in several structures, including alimentary system; axial musculature; metanephros; nervous system; and submandibular gland primordium. Orthologous to human ZNRD2 (zinc ribbon domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in ovary adult (RPKM 52.8), adrenal adult (RPKM 51.3) and 28 other tissues See more
Orthologs
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Genomic context

See Znrd2 in Genome Data Viewer
Location:
19 A; 19 4.34 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5780334..5781760, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5730306..5731732, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene potassium channel, subfamily K, member 7 Neighboring gene EH domain binding protein 1-like 1 Neighboring gene family with sequence similarity 89, member B Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene SCY1-like 1 (S. cerevisiae) Neighboring gene STARR-positive B cell enhancer ABC_E1970 Neighboring gene Malat1-associated small cytoplasmic RNA Neighboring gene metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: Fam89b

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein ZNRD2
Names
Sjogren syndrome/scleroderma autoantigen 1
Sjogren's syndrome/scleroderma autoantigen 1 homolog
autoantigen p27 homolog
sjoegren syndrome/scleroderma autoantigen 1 homolog
zinc ribbon domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020491.5NP_065237.3  protein ZNRD2

    See identical proteins and their annotated locations for NP_065237.3

    Status: VALIDATED

    Source sequence(s)
    AK011957, BQ033851, BY081504
    Consensus CDS
    CCDS29479.1
    UniProtKB/Swiss-Prot
    P56873
    UniProtKB/TrEMBL
    Q545N1, Q9CZE1, Q9D002
    Related
    ENSMUSP00000025885.5, ENSMUST00000025885.6
    Conserved Domains (1) summary
    pfam06677
    Location:3774
    Auto_anti-p27; Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5780334..5781760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)