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Tacstd2 tumor-associated calcium signal transducer 2 [ Mus musculus (house mouse) ]

Gene ID: 56753, updated on 2-Nov-2024

Summary

Official Symbol
Tacstd2provided by MGI
Official Full Name
tumor-associated calcium signal transducer 2provided by MGI
Primary source
MGI:MGI:1861606
See related
Ensembl:ENSMUSG00000051397 AllianceGenome:MGI:1861606
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ly97; EGP-1; TROP2; GA733-1
Summary
Involved in several processes, including negative regulation of branching involved in ureteric bud morphogenesis; negative regulation of cellular component organization; and negative regulation of substrate adhesion-dependent cell spreading. Acts upstream of or within positive regulation of stem cell differentiation. Located in several cellular components, including basal plasma membrane; extracellular space; and lateral plasma membrane. Is expressed in alimentary system; genitourinary system; sensory organ; and skin. Human ortholog(s) of this gene implicated in corneal dystrophy and gelatinous drop-like corneal dystrophy. Orthologous to human TACSTD2 (tumor associated calcium signal transducer 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See Tacstd2 in Genome Data Viewer
Location:
6 C1; 6 30.88 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (67511043..67512806, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (67534059..67535822, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16185 Neighboring gene STARR-seq mESC enhancer starr_16186 Neighboring gene myc induced nuclear antigen pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:67483136-67483367 Neighboring gene predicted gene, 44083 Neighboring gene immunoglobulin kappa chain variable 2-137 Neighboring gene interleukin 23 receptor Neighboring gene immunoglobulin kappa chain complex

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Clone Names

  • MGC141612, MGC141613

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in basal plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in lateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tumor-associated calcium signal transducer 2
Names
cell surface glycoprotein Trop-2
lymphocyte antigen 97
tunor-associated calcium signal transducer 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020047.3NP_064431.2  tumor-associated calcium signal transducer 2 precursor

    See identical proteins and their annotated locations for NP_064431.2

    Status: VALIDATED

    Source sequence(s)
    AC124758
    Consensus CDS
    CCDS20221.1
    UniProtKB/Swiss-Prot
    O55130, Q8BGV3
    Related
    ENSMUSP00000060099.5, ENSMUST00000058178.6
    Conserved Domains (1) summary
    pfam00086
    Location:67139
    Thyroglobulin_1; Thyroglobulin type-1 repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    67511043..67512806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)