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si:ch73-266f23.4 si:ch73-266f23.4 [ Danio rerio (zebrafish) ]

Gene ID: 571254, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch73-266f23.4provided by ZNC
Official Full Name
si:ch73-266f23.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-161017-15
See related
Ensembl:ENSDARG00000105713 AllianceGenome:ZFIN:ZDB-GENE-161017-15
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:ch73-266f23.4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (73550323..73562129, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (71908747..71920613, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene oocyte zinc finger protein XlCOF6 Neighboring gene zinc finger protein 1015 Neighboring gene zinc finger protein 271 Neighboring gene si:ch211-165i18.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    73550323..73562129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_694825.10 → XP_699917.3  gastrula zinc finger protein XlCGF57.1

    UniProtKB/TrEMBL
    A0A1L1QZL6, A0A8N7TER3
    Related
    ENSDARP00000143192.1, ENSDART00000174096.2
    Conserved Domains (4) summary
    COG5048
    Location:53 → 425
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:106 → 126
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:105 → 126
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:146 → 171
    zf-H2C2_2; Zinc-finger double domain

  2. XM_068220513.1 → XP_068076614.1  gastrula zinc finger protein XlCGF57.1

    Related
    ENSDARP00000143137.1, ENSDART00000174210.2
Nucleotide Protein Strain
Heading Accession and Version

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