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LYRM1 LYR motif containing 1 [ Homo sapiens (human) ]

Gene ID: 57149, updated on 2-Nov-2024

Summary

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Official Symbol
LYRM1provided by HGNC
Official Full Name
LYR motif containing 1provided by HGNC
Primary source
HGNC:HGNC:25074
See related
Ensembl:ENSG00000102897 MIM:614709; AllianceGenome:HGNC:25074
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
A211C6.1
Summary
The protein encoded by this gene belongs to the mitochondrial leucine/tyrosine/arginine motif family of proteins. Proteins of this family are short polypeptides that contain a leucine/tyrosine/arginine motif near the N-terminus. This gene is widely expressed with high levels in omental adipose tissue of obese individuals. In adipose tissue, the protein is localized to the nucleus where it promotes preadipocyte proliferation and lowers the rate of apoptosis to regulate adipose tissue homeostasis. Overexpression of this gene in adipocytes causes abnormal mitochondrial morphology and mitochondrial dysfunction. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]
Expression
Ubiquitous expression in liver (RPKM 13.3), fat (RPKM 11.4) and 25 other tissues See more
Orthologs
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Genomic context

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See LYRM1 in Genome Data Viewer
Location:
16p12.3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (20899882..20925006)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (20830796..20855920)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (20911204..20936328)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase medium chain family member 3 Neighboring gene RNA, U6 small nuclear 944, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:20816990-20817935 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10541 Neighboring gene uncharacterized LOC105371121 Neighboring gene ERI1 exoribonuclease family member 2 Neighboring gene RNA exonuclease 5 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:20876915-20878114 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:20878222-20878722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10543 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10544 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7246 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10545 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10546 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:20911499-20912284 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:20912285-20913070 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:20982344-20983543 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:20985044-20985544 Neighboring gene dynein axonemal heavy chain 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7247 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21059143-21059715 Neighboring gene uncharacterized LOC107984888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10547 Neighboring gene Sharpr-MPRA regulatory region 1818 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7249 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21170492-21170992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10548 Neighboring gene lipid droplet assembly factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. alpha-LA protects 3T3-L1 adipocytes from LYRM1-induced insulin resistance partially via its capacity to restore mitochondrial function and/or increase phosphorylation of IRS-1 and Akt.
    Title: α-Lipoic acid ameliorates impaired glucose uptake in LYRM1 overexpressing 3T3-L1 adipocytes through the IRS-1/Akt signaling pathway.
  2. overexpression of LYRM1 caused mitochondrial dysfunction in adipocytes, which might be responsible for the development of LYRM1-induced insulin resistance
    Title: Overexpression of LYRM1 induces mitochondrial impairment in 3T3-L1 adipocytes.
  3. Data suggest that LYRM1 might have the potential to modulate cell growth, apoptosis, and heart development.
    Title: LYRM1, a gene that promotes proliferation and inhibits apoptosis during heart development.
  4. Observational study of gene-disease association. (HuGE Navigator)
    Title: Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.
  5. By increasing cell proliferation and lowering the rate of apoptosis, LYRM1 has the potential to modulate the size of the preadipocyte pool and influence adipose tissue homeostasis
    Title: LYRM1, a novel gene promotes proliferation and inhibits apoptosis of preadipocytes.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in midbody IDA
Inferred from Direct Assay
more info
  
located_in mitochondrion HTP PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  

General protein information

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Preferred Names
LYR motif-containing protein 1

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128301.3 → NP_001121773.1  LYR motif-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001121773.1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Related
    ENSP00000219168.4, ENST00000219168.8
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  2. NM_001128302.3 → NP_001121774.1  LYR motif-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001121774.1

    Status: REVIEWED

    Source sequence(s)
    AL359616, BI547471, CX163936
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Related
    ENSP00000457333.1, ENST00000567954.6
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  3. NM_001302835.2 → NP_001289764.1  LYR motif-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001289764.1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Related
    ENSP00000379367.2, ENST00000396052.3
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  4. NM_001302836.2 → NP_001289765.1  LYR motif-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001289765.1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Related
    ENSP00000454551.1, ENST00000569023.5
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  5. NM_001369631.1 → NP_001356560.1  LYR motif-containing protein 1 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Conserved Domains (1) summary
    pfam05347
    Location:7 → 72
    Complex1_LYR; Complex 1 protein (LYR family)

  6. NM_001369632.1 → NP_001356561.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  7. NM_001369633.1 → NP_001356562.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  8. NM_001369634.1 → NP_001356563.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  9. NM_001369635.1 → NP_001356564.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  10. NM_001369636.1 → NP_001356565.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  11. NM_001369637.1 → NP_001356566.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  12. NM_001369638.1 → NP_001356567.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  13. NM_001369639.1 → NP_001356568.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  14. NM_001369641.1 → NP_001356570.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  15. NM_001369642.1 → NP_001356571.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  16. NM_001369644.1 → NP_001356573.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  17. NM_001369645.1 → NP_001356574.1  LYR motif-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  18. NM_020424.5 → NP_065157.1  LYR motif-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_065157.1

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Consensus CDS
    CCDS10593.1
    UniProtKB/Swiss-Prot
    B2R4M5, O43325
    Related
    ENSP00000454826.1, ENST00000568663.5
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

RNA

  1. NR_126516.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  2. NR_126520.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394
    Related
    ENST00000412082.6

  3. NR_126521.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  4. NR_126527.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  5. NR_126528.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  6. NR_161425.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  7. NR_161426.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  8. NR_161427.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  9. NR_161429.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  10. NR_161430.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  11. NR_161431.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

  12. NR_161432.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC002394

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    20899882..20925006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023475.2 → XP_016878964.2  LYR motif-containing protein 1 isoform X1

  2. XM_047434371.1 → XP_047290327.1  LYR motif-containing protein 1 isoform X2

  3. XM_017023476.2 → XP_016878965.2  LYR motif-containing protein 1 isoform X3

  4. XM_011545908.3 → XP_011544210.1  LYR motif-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011544210.1

    Conserved Domains (1) summary
    pfam05347
    Location:7 → 72
    Complex1_LYR; Complex 1 protein (LYR family)

  5. XM_047434379.1 → XP_047290335.1  LYR motif-containing protein 1 isoform X4

  6. XM_047434374.1 → XP_047290330.1  LYR motif-containing protein 1 isoform X4

  7. XM_011545901.3 → XP_011544203.1  LYR motif-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011544203.1

    Conserved Domains (1) summary
    pfam05347
    Location:7 → 72
    Complex1_LYR; Complex 1 protein (LYR family)

  8. XM_047434375.1 → XP_047290331.1  LYR motif-containing protein 1 isoform X4

  9. XM_047434376.1 → XP_047290332.1  LYR motif-containing protein 1 isoform X4

  10. XM_017023478.2 → XP_016878967.1  LYR motif-containing protein 1 isoform X4

    Conserved Domains (1) summary
    pfam05347
    Location:7 → 72
    Complex1_LYR; Complex 1 protein (LYR family)

  11. XM_047434378.1 → XP_047290334.1  LYR motif-containing protein 1 isoform X4

  12. XM_011545900.3 → XP_011544202.1  LYR motif-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011544202.1

    Conserved Domains (1) summary
    pfam05347
    Location:7 → 72
    Complex1_LYR; Complex 1 protein (LYR family)

  13. XM_047434373.1 → XP_047290329.1  LYR motif-containing protein 1 isoform X4

  14. XM_047434380.1 → XP_047290336.1  LYR motif-containing protein 1 isoform X5

    UniProtKB/Swiss-Prot
    B2R4M5, O43325

  15. XM_047434372.1 → XP_047290328.1  LYR motif-containing protein 1 isoform X4

  16. XM_047434377.1 → XP_047290333.1  LYR motif-containing protein 1 isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    20830796..20855920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054313507.1 → XP_054169482.1  LYR motif-containing protein 1 isoform X1

  2. XM_054313508.1 → XP_054169483.1  LYR motif-containing protein 1 isoform X2

  3. XM_054313509.1 → XP_054169484.1  LYR motif-containing protein 1 isoform X3

  4. XM_054313517.1 → XP_054169492.1  LYR motif-containing protein 1 isoform X4

  5. XM_054313514.1 → XP_054169489.1  LYR motif-containing protein 1 isoform X4

  6. XM_054313511.1 → XP_054169486.1  LYR motif-containing protein 1 isoform X4

  7. XM_054313515.1 → XP_054169490.1  LYR motif-containing protein 1 isoform X4

  8. XM_054313510.1 → XP_054169485.1  LYR motif-containing protein 1 isoform X4

  9. XM_054313513.1 → XP_054169488.1  LYR motif-containing protein 1 isoform X4

  10. XM_054313518.1 → XP_054169493.1  LYR motif-containing protein 1 isoform X5

    UniProtKB/Swiss-Prot
    B2R4M5, O43325

  11. XM_054313512.1 → XP_054169487.1  LYR motif-containing protein 1 isoform X4

  12. XM_054313516.1 → XP_054169491.1  LYR motif-containing protein 1 isoform X4

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O43325.1 GenPept UniProtKB/Swiss-Prot:O43325

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