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DQN42_RS09475 LysM peptidoglycan-binding domain-containing protein [ Streptococcus intermedius ]

Gene ID: 57845672, updated on 12-Apr-2023

Summary

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Gene symbol
DQN42_RS09475
Gene description
LysM peptidoglycan-binding domain-containing protein
Locus tag
DQN42_RS09475
Gene type
protein coding
Organism
Streptococcus intermedius (strain: NCTC11324, serovar: not available: to be reported later, culture-collection: NCTC:11324, type-material: type strain of Streptococcus intermedius)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group
Old locus tag
NCTC11324_01907
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Genomic context

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Location:
chromosome: 1

1 - NZ_LS483436.1Genomic Context describing neighboring genes Neighboring gene tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Neighboring gene tRNA 2-thiouridine(34) synthase MnmA Neighboring gene L-serine ammonia-lyase, iron-sulfur-dependent subunit beta Neighboring gene L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_LS483436.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Modular design of the Enterococcus hirae muramidase-2 and Streptococcus faecalis autolysin. Joris B, et al. FEMS Microbiol Lett, 1992 Mar 15. PMID 1352512
  2. The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD). Bateman A, et al. J Mol Biol, 2000 Jun 16. PMID 10843862

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
LysM peptidoglycan-binding domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_LS483436.1 Reference assembly

    Range
    1904779..1905285 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003075446.1 LysM peptidoglycan-binding domain-containing protein [Streptococcus intermedius]

    Conserved Domains (2) summary
    cd00118
    Location:35 → 78
    LysM; Lysin Motif is a small domain involved in binding peptidoglycan
    COG0739
    Location:36 → 152
    NlpD; Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version