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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001079883.1 → NP_001073352.1 B-cell lymphoma/leukemia 11B isoform a
See identical proteins and their annotated locations for NP_001073352.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AC119219, AC119921, BM950501, BQ442983, CV563304
- Consensus CDS
-
CCDS36553.1
- UniProtKB/Swiss-Prot
- Q8C2I1, Q99PV6, Q99PV7, Q99PV8, Q9JLF8
- Related
- ENSMUSP00000068258.5, ENSMUST00000066060.11
- Conserved Domains (3) summary
-
- sd00017
Location:788 → 808
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:787 → 808
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:800 → 825
- zf-H2C2_2; Zinc-finger double domain
-
NM_001286343.1 → NP_001273272.1 B-cell lymphoma/leukemia 11B isoform c
See identical proteins and their annotated locations for NP_001273272.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks two internal coding exons but maintains the reading frame, compared to variant 1. The resulting isoform (c) lacks an internal segment, compared to isoform a.
- Source sequence(s)
-
AC119219, AC119921
- Consensus CDS
-
CCDS70419.1
- UniProtKB/TrEMBL
-
A0A0R4J1E1
- Related
- ENSMUSP00000105513.2, ENSMUST00000109887.8
- Conserved Domains (3) summary
-
- sd00017
Location:594 → 614
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:593 → 614
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:606 → 631
- zf-H2C2_2; Zinc-finger double domain
-
NM_021399.2 → NP_067374.2 B-cell lymphoma/leukemia 11B isoform b
See identical proteins and their annotated locations for NP_067374.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame coding exon, compared to variant 1. The resulting isoform (b) lacks an internal segment, compared to isoform a.
- Source sequence(s)
-
AC119219, AC119921, BQ745012, CV563304
- Consensus CDS
-
CCDS36552.1
- UniProtKB/Swiss-Prot
-
Q99PV8
- Related
- ENSMUSP00000105517.3, ENSMUST00000109891.3
- Conserved Domains (4) summary
-
- sd00017
Location:716 → 736
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:356 → 376
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:715 → 736
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:728 → 753
- zf-H2C2_2; Zinc-finger double domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000078.7 Reference GRCm39 C57BL/6J
- Range
-
107876662..107970404 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006516111.4 → XP_006516174.1 B-cell lymphoma/leukemia 11B isoform X4
- Conserved Domains (4) summary
-
- sd00017
Location:784 → 804
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:424 → 444
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:783 → 804
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:796 → 821
- zf-H2C2_2; Zinc-finger double domain
-
XM_036157546.1 → XP_036013439.1 B-cell lymphoma/leukemia 11B isoform X5
- Conserved Domains (4) summary
-
- sd00017
Location:783 → 803
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:423 → 443
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:782 → 803
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:795 → 820
- zf-H2C2_2; Zinc-finger double domain
-
XM_011244153.3 → XP_011242455.1 B-cell lymphoma/leukemia 11B isoform X3
- Conserved Domains (4) summary
-
- sd00017
Location:787 → 807
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:427 → 447
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:786 → 807
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:799 → 824
- zf-H2C2_2; Zinc-finger double domain
-
XM_006516114.4 → XP_006516177.1 B-cell lymphoma/leukemia 11B isoform X9
- Conserved Domains (4) summary
-
- sd00017
Location:715 → 735
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:355 → 375
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:714 → 735
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:727 → 752
- zf-H2C2_2; Zinc-finger double domain
-
XM_017315145.3 → XP_017170634.1 B-cell lymphoma/leukemia 11B isoform X10
- Conserved Domains (4) summary
-
- sd00017
Location:670 → 690
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:310 → 330
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:669 → 690
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:682 → 707
- zf-H2C2_2; Zinc-finger double domain
-
XM_017315144.3 → XP_017170633.1 B-cell lymphoma/leukemia 11B isoform X10
- Conserved Domains (4) summary
-
- sd00017
Location:670 → 690
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:310 → 330
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:669 → 690
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:682 → 707
- zf-H2C2_2; Zinc-finger double domain
-
XM_036157548.1 → XP_036013441.1 B-cell lymphoma/leukemia 11B isoform X8
- Conserved Domains (4) summary
-
- sd00017
Location:738 → 758
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:378 → 398
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:737 → 758
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:750 → 775
- zf-H2C2_2; Zinc-finger double domain
-
XM_017315143.3 → XP_017170632.1 B-cell lymphoma/leukemia 11B isoform X7
- Conserved Domains (4) summary
-
- sd00017
Location:742 → 762
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:382 → 402
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:741 → 762
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:754 → 779
- zf-H2C2_2; Zinc-finger double domain
-
XM_006516110.5 → XP_006516173.1 B-cell lymphoma/leukemia 11B isoform X2
- Conserved Domains (4) summary
-
- sd00017
Location:828 → 848
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:468 → 488
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:827 → 848
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:840 → 865
- zf-H2C2_2; Zinc-finger double domain
-
XM_011244152.4 → XP_011242454.1 B-cell lymphoma/leukemia 11B isoform X1
- Conserved Domains (4) summary
-
- sd00017
Location:832 → 852
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:472 → 492
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:831 → 852
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:844 → 869
- zf-H2C2_2; Zinc-finger double domain
-
XM_006516113.5 → XP_006516176.1 B-cell lymphoma/leukemia 11B isoform X6
- Conserved Domains (4) summary
-
- sd00017
Location:760 → 780
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:400 → 420
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:759 → 780
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:772 → 797
- zf-H2C2_2; Zinc-finger double domain
-
XM_036157549.1 → XP_036013442.1 B-cell lymphoma/leukemia 11B isoform X8
- Conserved Domains (4) summary
-
- sd00017
Location:738 → 758
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:378 → 398
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:737 → 758
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:750 → 775
- zf-H2C2_2; Zinc-finger double domain
-
XM_036157547.1 → XP_036013440.1 B-cell lymphoma/leukemia 11B isoform X7
- Conserved Domains (4) summary
-
- sd00017
Location:742 → 762
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:382 → 402
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:741 → 762
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:754 → 779
- zf-H2C2_2; Zinc-finger double domain
-
XM_006516116.4 → XP_006516179.1 B-cell lymphoma/leukemia 11B isoform X12
- Conserved Domains (4) summary
-
- sd00017
Location:608 → 628
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:248 → 268
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:607 → 628
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:620 → 645
- zf-H2C2_2; Zinc-finger double domain
-
XM_006516115.4 → XP_006516178.1 B-cell lymphoma/leukemia 11B isoform X11
- Conserved Domains (4) summary
-
- sd00017
Location:657 → 677
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:297 → 317
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:656 → 677
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:669 → 694
- zf-H2C2_2; Zinc-finger double domain