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Zfp862-ps zinc finger protein 862, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 58894, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp862-psprovided by MGI
Official Full Name
zinc finger protein 862, pseudogeneprovided by MGI
Primary source
MGI:MGI:1889827
See related
Ensembl:ENSMUSG00000121879 AllianceGenome:MGI:1889827
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfp862; mKIAA0543; 4732460K03Rik
Summary
Is expressed in several structures, including central nervous system; dorsal root ganglion; genitourinary system; and sensory organ. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in ovary adult (RPKM 6.8), limb E14.5 (RPKM 6.5) and 28 other tissues See more
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Genomic context

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See Zfp862-ps in Genome Data Viewer
Location:
6 B2.3; 6 23.48 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (48481273..48511766)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (48504339..48534832)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57777 Neighboring gene zinc finger protein 467 Neighboring gene STARR-positive B cell enhancer mm9_chr6:48394046-48394347 Neighboring gene SCO-spondin Neighboring gene ribosomal protein L35a pseudogene Neighboring gene PEST proteolytic signal containing nuclear protein pseudogene Neighboring gene RIKEN cDNA 1700026J14 gene Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit E2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Aug 31. PMID 14621295
  2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  3. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015597.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longer transcript.
    Source sequence(s)
    AC153815, AC154013

  2. NR_027808.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks an exon and includes an additional exon, compared to variant 1.
    Source sequence(s)
    AC153815, BC068148
    Related
    ENSMUST00000204484.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    48481273..48511766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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