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susF starch-binding outer membrane protein SusF [ Bacteroides thetaiotaomicron ]

Gene ID: 60924868, updated on 24-Oct-2024

Summary

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Gene symbol
susF
Gene description
starch-binding outer membrane protein SusF
Locus tag
FE838_RS07970
Gene type
protein coding
RefSeq status
PIPELINE
Organism
Bacteroides thetaiotaomicron (strain: DSM 2079, nat-host: Homo sapiens, culture-collection: DSM:2079, type-material: type strain of Bacteroides thetaiotaomicron)
Lineage
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Old locus tag
FE838_08360
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Genomic context

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NZ_CP040530.1Genomic Context describing neighboring genes Neighboring gene UDP-2,3-diacylglucosamine diphosphatase Neighboring gene alpha-amylase SusG Neighboring gene starch-binding outer membrane protein SusE Neighboring gene starch-binding outer membrane lipoprotein SusD

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP040530.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism. Cameron EA, et al. J Biol Chem, 2012 Oct 5. PMID 22910908, Free PMC Article
  2. Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron. Shipman JA, et al. J Bacteriol, 2000 Oct. PMID 10986238, Free PMC Article
  3. Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron. Cho KH, et al. J Bacteriol, 2001 Dec. PMID 11717282, Free PMC Article
  4. Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Wu M, et al. Science, 2015 Oct 2. PMID 26430127, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
starch-binding outer membrane protein SusF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP040530.1 Reference assembly

    Range
    2104437..2105894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_008767007.1 MULTISPECIES: starch-binding outer membrane protein SusF [Bacteroides]

    See identical proteins and their annotated locations for WP_008767007.1

    Status: PIPELINE

    UniProtKB/Swiss-Prot
    G8JZS6, Q45771, Q7C3Z4
    UniProtKB/TrEMBL
    A0A0P0FFL5, C6IPW5
    Conserved Domains (3) summary
    cd12966
    Location:383 → 484
    CBM-Ec_CBM-Fc; carbohydrate-binding modules Ec and Fc from SusE and SusF, respectively, and similar CBMs
    pfam16411
    Location:280 → 476
    SusF_SusE; Outer membrane protein SusF_SusE
    pfam17142
    Location:21 → 273
    DUF5115; Domain of unknown function (DUF5115)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G8JZS6.1

Gene LinkOut

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Molecular Biology Databases