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Rpl34-ps1 ribosomal protein L34, pseudogene 1 [ Mus musculus (house mouse) ]

Gene ID: 619547, updated on 2-Nov-2024

Summary

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Official Symbol
Rpl34-ps1provided by MGI
Official Full Name
ribosomal protein L34, pseudogene 1provided by MGI
Primary source
MGI:MGI:3704270
See related
Ensembl:ENSMUSG00000068396 AllianceGenome:MGI:3704270
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10239; EG619547
Summary
Predicted to be a structural constituent of ribosome. Predicted to be located in cytosolic ribosome; endoplasmic reticulum; and nucleolus. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL34 (ribosomal protein L34). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Note: It is unclear whether this locus is a functional gene or a pseudogene. However, the locus has transcript support and an intact open reading frame so it is represented as protein-coding in Gene and RefSeq. [03 Dec 2010]
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Genomic context

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See Rpl34-ps1 in Genome Data Viewer
Location:
6 C1; 6 32.14 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (71101573..71101985)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (71124589..71125001)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16248 Neighboring gene predicted gene, 23485 Neighboring gene STARR-seq mESC enhancer starr_16251 Neighboring gene predicted gene, 38826 Neighboring gene threonine synthase-like 2 (bacterial) Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:71093854-71094037 Neighboring gene STARR-seq mESC enhancer starr_16253 Neighboring gene predicted gene, 30391

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis. Mikula M, et al. Proteome Sci, 2015. PMID 26336360, Free PMC Article
  2. Proteomic Analysis of the Spinophilin Interactome in Rodent Striatum Following Psychostimulant Sensitization. Watkins DS, et al. Proteomes, 2018 Dec 17. PMID 30562941, Free PMC Article
  3. Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells. Zhang S, et al. Sci Data, 2018 Nov 20. PMID 30457570, Free PMC Article
  4. ATG5 is required for B cell polarization and presentation of particulate antigens. Arbogast F, et al. Autophagy, 2019 Feb. PMID 30196744, Free PMC Article
  5. Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors. Kim H, et al. Cell, 2018 Dec 13. PMID 30550785, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC103270, MGC117759

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ribosomal protein L34, pseudogene 1
Names
ribosomal protein L34 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199350.1 → NP_001186279.1  ribosomal protein L34, pseudogene 1

    See identical proteins and their annotated locations for NP_001186279.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100360
    UniProtKB/Swiss-Prot
    Q497V4, Q9D1R9
    Related
    ENSMUST00000121998.2
    Conserved Domains (1) summary
    pfam01199
    Location:1 → 96
    Ribosomal_L34e; Ribosomal protein L34e

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    71101573..71101985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005329.9: Suppressed sequence

    Description
    NG_005329.9: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

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