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Tmem69 transmembrane protein 69 [ Rattus norvegicus (Norway rat) ]

Gene ID: 619582, updated on 17-Aug-2024

Summary

Symbol
Tmem69provided by RGD
Full Name
transmembrane protein 69provided by RGD
Primary source
RGD:1561569
See related
EnsemblRapid:ENSRNOG00000029152 AllianceGenome:RGD:1561569
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human TMEM69 (transmembrane protein 69). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 184.2), Muscle (RPKM 178.5) and 9 other tissues See more
Orthologs
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Genomic context

Location:
5q35
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (135241557..135247323, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (130004888..130008466, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (135394013..135397591, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ribosomal protein L7a, pseudogene 20 Neighboring gene intracisternal A particle-promoted polypeptide Neighboring gene GC-rich promoter binding protein 1-like 1 Neighboring gene coiled-coil domain containing 17 Neighboring gene nuclear autoantigenic sperm protein

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035001.2NP_001030173.1  transmembrane protein 69

    See identical proteins and their annotated locations for NP_001030173.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161923
    UniProtKB/TrEMBL
    A6JZ76, B1WBX2
    Conserved Domains (1) summary
    pfam11911
    Location:95230
    DUF3429; Protein of unknown function (DUF3429)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    135241557..135247323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288339.1XP_063144409.1  transmembrane protein 69 isoform X1

    UniProtKB/TrEMBL
    A6JZ76, B1WBX2
    Related
    ENSRNOP00000042975.3, ENSRNOT00000050434.6