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EHI_043240 glycogen phosphorylase, putative [ Entamoeba histolytica HM-1:IMSS ]

Gene ID: 6220750, updated on 17-May-2024

Summary

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Gene symbol
EHI_043240
Gene description
glycogen phosphorylase, putative
Locus tag
EHI_043240
See related
AmoebaDB:EHI_043240; VEuPathDB:EHI_043240
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
Lineage
Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
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Genomic context

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See EHI_043240 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001916260.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001916260.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, putative
XP_001914629.1
  • encoded by transcript EHI_043240A
    predicted by GeneZilla

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001916260.1 Reference assembly

    Range
    429..1007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001914594.1 → XP_001914629.1  glycogen phosphorylase, putative, partial [Entamoeba histolytica HM-1:IMSS]

    See identical proteins and their annotated locations for XP_001914629.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A175K200, B1N613
    Conserved Domains (1) summary
    cl10013
    Location:7 → 192
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
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