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basic helix-loop-helix (bHLH) DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6240759, updated on 18-Sep-2024

Summary

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Official Full Name
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Primary source
TAIR:AT1G29950
Locus tag
AT1G29950
See related
Araport:AT1G29950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1P2.2
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (10491698..10494598)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene chlorophyll A/B binding protein 1 Neighboring gene nuclear RNA polymerase A2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene AGAMOUS-like 64

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantification of Xylem-Specific Thermospermine-Dependent Translation of SACL Transcripts with Dual Luciferase Reporter System. Solé-Gil A, et al. Methods Mol Biol, 2024. PMID 37897601
  2. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Cai Q, et al. Plant Cell Physiol, 2016 Aug. PMID 27388339
  3. The Arabidopsis basic/helix-loop-helix transcription factor family. Toledo-Ortiz G, et al. Plant Cell, 2003 Aug. PMID 12897250, Free PMC Article
  4. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Heim MA, et al. Mol Biol Evol, 2003 May. PMID 12679534
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Miscellaneous features

  • Loc: 10492498-10492575 AT1G29950.uORF1
  • Loc: 10492790-10492897 AT1G29950.uORF2-1
  • Loc: 10493066-10493104 AT1G29950.uORF2-2
NM_102735.3
NM_202208.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in xylem development IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NP_564342.1
  • basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G50010.1); Has 770 Blast hits to 729 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 29; Fungi - 28; Plants - 411; Viruses - 2; Other Eukaryotes - 298 (source: NCBI BLink).
NP_973937.1
  • basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G50010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10491698..10494598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102735.3 → NP_564342.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564342.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681I6, Q9ASX9, Q9FXG5
    UniProtKB/TrEMBL
    A0A178WGL6, A0A5S9WCL6, A0A7G2DWY5, C0Z288
    Conserved Domains (1) summary
    cd18917
    Location:208 → 243
    bHLH_AtSAC51_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 (SAC51) and similar proteins

  2. NM_202208.1 → NP_973937.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973937.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681I6, Q9ASX9, Q9FXG5
    UniProtKB/TrEMBL
    A0A178WGL6, A0A5S9WCL6, A0A7G2DWY5, C0Z288
    Conserved Domains (1) summary
    cd18917
    Location:208 → 243
    bHLH_AtSAC51_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 (SAC51) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ASX9.1

Gene LinkOut

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Molecular Biology Databases
Research Materials