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linoleate 9S-lipoxygenase-4 protein, putative (DUF581) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6241094, updated on 18-Sep-2024

Summary

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Official Full Name
linoleate 9S-lipoxygenase-4 protein, putative (DUF581)
Primary source
TAIR:AT1G53903
Locus tag
AT1G53903
See related
Araport:AT1G53903
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (20132071..20133045)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LURP-one-like protein (DUF567) Neighboring gene Eukaryotic translation initiation factor 2B (eIF-2B) family protein Neighboring gene uncharacterized protein Neighboring gene GDSL-motif lipase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001124015.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
linoleate 9S-lipoxygenase-4 protein, putative (DUF581)
NP_001117487.1
  • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G53885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20132071..20133045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001124015.2 → NP_001117487.1  linoleate 9S-lipoxygenase-4 protein, putative (DUF581) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117487.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DO11, P0DO12, Q8GWT6
    UniProtKB/TrEMBL
    A0A178WPA7, A0A7G2DXM4
    Conserved Domains (1) summary
    pfam04570
    Location:42 → 83
    zf-FLZ; zinc-finger of the FCS-type, C2-C2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DO11.1
P0DO12.1

Gene LinkOut

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