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F-box family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6241255, updated on 18-Sep-2024

Summary

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Official Full Name
F-box family protein
Primary source
TAIR:AT1G25211
Locus tag
AT1G25211
See related
Araport:AT1G25211
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (8835386..8837007)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene UDP-3-O-acyl N-acetylglycosamine deacetylase family protein Neighboring gene ncRNA Neighboring gene anthranilate synthase beta subunit 1 Neighboring gene ncRNA Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001123880.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box family protein
NP_001117352.1
  • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8835386..8837007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001123880.1 → NP_001117352.1  F-box family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117352.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DI02, P0DI03, P0DI04, P0DI05, P0DI06, Q0WR04, Q56X62, Q56XG9, Q7GAV1, Q8GRJ5, Q8RXU7, Q9FE36, Q9FXK3, Q9FXK7
    UniProtKB/TrEMBL
    A0A178W943, A0A654ECX7
    Conserved Domains (2) summary
    smart00256
    Location:28 → 67
    FBOX; A Receptor for Ubiquitination Targets
    pfam07734
    Location:215 → 418
    FBA_1; F-box associated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DI02.1
P0DI03.1
P0DI04.1
P0DI05.1
P0DI06.1

Gene LinkOut

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