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Tcstv4 Tcstv family member 4 [ Mus musculus (house mouse) ]

Gene ID: 625360, updated on 17-Aug-2024

Summary

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Official Symbol
Tcstv4provided by MGI
Official Full Name
Tcstv family member 4provided by MGI
Primary source
MGI:MGI:4840510
See related
Ensembl:ENSMUSG00000094796 AllianceGenome:MGI:4840510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in thymus adult (RPKM 1.5), spleen adult (RPKM 1.3) and 9 other tissues See more
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Genomic context

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See Tcstv4 in Genome Data Viewer
Location:
13 D2.3; 13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (120761833..120770379)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (120300233..120308843)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52032 Neighboring gene predicted gene, 39470 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene 2 cell stage variable group member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
2-cell-stage, variable group, member 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037925.3 → NP_001033014.1  2-cell-stage, variable group, member 3-like

    See identical proteins and their annotated locations for NP_001033014.1

    Status: VALIDATED

    Source sequence(s)
    AC239678
    Consensus CDS
    CCDS56910.1
    UniProtKB/TrEMBL
    Q3V185
    Related
    ENSMUSP00000153422.2, ENSMUST00000225029.2
    Conserved Domains (1) summary
    pfam07270
    Location:7 → 154
    DUF1438; Protein of unknown function (DUF1438)

  2. NM_001424720.1 → NP_001411649.1  2-cell-stage, variable group, member 3-like

    Status: VALIDATED

    Source sequence(s)
    AC239678
    UniProtKB/TrEMBL
    Q3V185
    Related
    ENSMUSP00000111141.4, ENSMUST00000081558.8

  3. NM_001424721.1 → NP_001411650.1  2-cell-stage, variable group, member 3-like

    Status: VALIDATED

    Source sequence(s)
    AC239678
    UniProtKB/TrEMBL
    Q3V185

  4. NM_001424722.1 → NP_001411651.1  2-cell-stage, variable group, member 3-like

    Status: VALIDATED

    Source sequence(s)
    AC239678
    UniProtKB/TrEMBL
    Q3V185

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    120761833..120770379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315556.1 → XP_017171045.1  2-cell-stage, variable group, member 3-like isoform X1

    UniProtKB/TrEMBL
    Q3V185
    Conserved Domains (1) summary
    pfam07270
    Location:7 → 154
    DUF1438; Protein of unknown function (DUF1438)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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