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Gm6710 predicted gene 6710 [ Mus musculus (house mouse) ]

Gene ID: 626832, updated on 28-Oct-2024

Summary

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Official Symbol
Gm6710provided by MGI
Official Full Name
predicted gene 6710provided by MGI
Primary source
MGI:MGI:3779623
See related
Ensembl:ENSMUSG00000078887 AllianceGenome:MGI:3779623
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
WF-4; 1600017I02Rik; 2310011F05Rik; 2900089K14Rik; 3100002L24Rik
Summary
Is expressed in central nervous system; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human ZNF17 (zinc finger protein 17) and ZNF442 (zinc finger protein 442). [provided by Alliance of Genome Resources, Oct 2024]
Annotation information
Annotation category: partial on reference assembly
Expression
Broad expression in bladder adult (RPKM 6.4), cerebellum adult (RPKM 6.0) and 24 other tissues See more
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Genomic context

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See Gm6710 in Genome Data Viewer
Location:
2 H4; 2 98.72 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (175661013..175674975)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (175869215..175885510)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S8, pseudogene 2 Neighboring gene zinc finger protein 937 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr2:175868122-175868422 Neighboring gene predicted gene, 42247 Neighboring gene zinc finger protein 966

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
KRAB box and zinc finger, C2H2 type domain containing protein
Names
KRAB box and zinc finger, C2H2 type domain containing

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164689.1 → NP_001158161.1  KRAB box and zinc finger, C2H2 type domain containing protein

    See identical proteins and their annotated locations for NP_001158161.1

    Status: VALIDATED

    Source sequence(s)
    AL845476
    Consensus CDS
    CCDS50823.1
    UniProtKB/TrEMBL
    A2ART0, F7CJX1
    Related
    ENSMUSP00000104640.4, ENSMUST00000109012.4
    Conserved Domains (4) summary
    COG5048
    Location:129 → 515
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:357 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box
    pfam13465
    Location:509 → 534
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    175661013..175674975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251928.2 → XP_030107788.2  KRAB box and zinc finger, C2H2 type domain containing protein isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:185 → 347
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:301 → 321
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box
    pfam13465
    Location:341 → 366
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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