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Gm2004 predicted gene 2004 [ Mus musculus (house mouse) ]

Gene ID: 628147, updated on 10-Oct-2024

Summary

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Official Symbol
Gm2004provided by MGI
Official Full Name
predicted gene 2004provided by MGI
Primary source
MGI:MGI:3780174
See related
Ensembl:ENSMUSG00000095648 AllianceGenome:MGI:3780174
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
100039000
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Genomic context

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See Gm2004 in Genome Data Viewer
Location:
2 H4; 2 98.56 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (175873883..175895229, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (176138720..176153484, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene zinc finger protein 717-like Neighboring gene predicted gene 16357 Neighboring gene predicted gene 11009 Neighboring gene predicted gene, 42249 Neighboring gene RIKEN cDNA 2210418O10 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC628147
Names
zinc finger protein 709-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362250.2 → NP_001349179.1  uncharacterized protein LOC628147 isoform 1

    Status: VALIDATED

    Source sequence(s)
    BX890623
    UniProtKB/TrEMBL
    E9Q9K2, J3KMS2, J3QMJ8, Q8C1K5, Q8CFP2
    Related
    ENSMUSP00000135992.3, ENSMUST00000178872.4
    Conserved Domains (1) summary
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

  2. NM_001408189.1 → NP_001395118.1  uncharacterized protein LOC628147 isoform 1

    Status: VALIDATED

    Source sequence(s)
    BX890623
    UniProtKB/TrEMBL
    E9Q9K2, J3KMS2

  3. NM_001408190.1 → NP_001395119.1  uncharacterized protein LOC628147 isoform 2

    Status: VALIDATED

    Source sequence(s)
    BX890623
    UniProtKB/TrEMBL
    A2ARL5
    Related
    ENSMUSP00000104677.4, ENSMUST00000109049.11

  4. NM_001408191.1 → NP_001395120.1  uncharacterized protein LOC628147 isoform 2

    Status: VALIDATED

    Source sequence(s)
    BX890623
    UniProtKB/TrEMBL
    A2ARL5

  5. NM_001408192.1 → NP_001395121.1  uncharacterized protein LOC628147 isoform 4

    Status: VALIDATED

    Source sequence(s)
    BX890623

  6. NM_001408193.1 → NP_001395122.1  uncharacterized protein LOC628147 isoform 5

    Status: VALIDATED

    Source sequence(s)
    BX890623

  7. NM_001408194.1 → NP_001395123.1  uncharacterized protein LOC628147 isoform 6

    Status: VALIDATED

    Source sequence(s)
    BX890623

  8. NM_001408195.1 → NP_001395124.1  uncharacterized protein LOC628147 isoform 7

    Status: VALIDATED

    Source sequence(s)
    BX890623

  9. NM_001408196.1 → NP_001395125.1  uncharacterized protein LOC628147 isoform 8

    Status: VALIDATED

    Source sequence(s)
    BX890623

  10. NM_001408197.1 → NP_001395126.1  uncharacterized protein LOC628147 isoform 9

    Status: VALIDATED

    Source sequence(s)
    BX890623

  11. NM_001408198.1 → NP_001395127.1  uncharacterized protein LOC628147 isoform 10

    Status: VALIDATED

    Source sequence(s)
    BX890623
    UniProtKB/TrEMBL
    A2BG90

  12. NM_001408199.1 → NP_001395128.1  uncharacterized protein LOC628147 isoform 10

    Status: VALIDATED

    Source sequence(s)
    BX890623
    UniProtKB/TrEMBL
    A2BG90
    Related
    ENSMUSP00000136346.2, ENSMUST00000179349.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    175873883..175895229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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