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Susd1 sushi domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 634731, updated on 2-Nov-2024

Summary

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Official Symbol
Susd1provided by MGI
Official Full Name
sushi domain containing 1provided by MGI
Primary source
MGI:MGI:3651543
See related
Ensembl:ENSMUSG00000038578 AllianceGenome:MGI:3651543
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12528; A530080P10
Summary
Orthologous to human SUSD1 (sushi domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in placenta adult (RPKM 9.1), liver E14.5 (RPKM 6.5) and 23 other tissues See more
Orthologs
human all
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Genomic context

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See Susd1 in Genome Data Viewer
Location:
4 B3; 4 32.5 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59314190..59438738, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59314202..59439869, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9084 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:59274266-59274419 Neighboring gene STARR-seq mESC enhancer starr_10371 Neighboring gene STARR-positive B cell enhancer mm9_chr4:59288450-59288750 Neighboring gene predicted gene 12596 Neighboring gene STARR-positive B cell enhancer mm9_chr4:59300165-59300466 Neighboring gene predicted gene, 35578 Neighboring gene STARR-positive B cell enhancer mm9_chr4:59344609-59344910 Neighboring gene STARR-positive B cell enhancer ABC_E9588 Neighboring gene STARR-positive B cell enhancer ABC_E9589 Neighboring gene STARR-seq mESC enhancer starr_10373 Neighboring gene zinc finger, MYND domain containing 19 pseudogene Neighboring gene STARR-seq mESC enhancer starr_10375 Neighboring gene STARR-positive B cell enhancer ABC_E4630 Neighboring gene STARR-seq mESC enhancer starr_10376 Neighboring gene polypyrimidine tract binding protein 3 Neighboring gene STARR-seq mESC enhancer starr_10379 Neighboring gene STARR-positive B cell enhancer ABC_E4631 Neighboring gene STARR-positive B cell enhancer ABC_E6183 Neighboring gene STARR-positive B cell enhancer ABC_E835 Neighboring gene STARR-seq mESC enhancer starr_10381 Neighboring gene hydroxysteroid dehydrogenase like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A mouse knockout library for secreted and transmembrane proteins. Tang T, et al. Nat Biotechnol, 2010 Jul. PMID 20562862
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (1)  1 citation

General gene information

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Markers

Homology

Clone Names

  • FLJ32142

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
sushi domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163288.3 → NP_001156760.2  sushi domain-containing protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AL808112, AL824704
    Consensus CDS
    CCDS51184.1
    UniProtKB/TrEMBL
    B2RY76, E9Q3H4
    Related
    ENSMUSP00000048201.7, ENSMUST00000040166.14
    Conserved Domains (3) summary
    cd00033
    Location:184 → 240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130 → 161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:47 → 74
    EGF_3; EGF domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    59314190..59438738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164287.1 → XP_036020180.1  sushi domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    B2RY76
    Conserved Domains (3) summary
    cd00033
    Location:94 → 150
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:40 → 71
    EGF_CA; Calcium-binding EGF-like domain
    pfam18861
    Location:526 → 657
    PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J

  2. XM_006538143.5 → XP_006538206.1  sushi domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    B2RY76
    Conserved Domains (2) summary
    cd00033
    Location:146 → 202
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:92 → 123
    EGF_CA; Calcium-binding EGF-like domain

  3. XM_006538141.5 → XP_006538204.1  sushi domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    B2RY76
    Conserved Domains (3) summary
    cd00033
    Location:184 → 240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130 → 161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:47 → 74
    EGF_3; EGF domain

  4. XM_006538142.5 → XP_006538205.1  sushi domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    B2RXU0
    Conserved Domains (3) summary
    cd00033
    Location:184 → 240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130 → 161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:47 → 74
    EGF_3; EGF domain

  5. XM_036164288.1 → XP_036020181.1  sushi domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A2AN91
    Conserved Domains (2) summary
    cd00033
    Location:27 → 83
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    pfam18861
    Location:459 → 590
    PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J

  6. XM_006538144.5 → XP_006538207.1  sushi domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    B2RY76
    Conserved Domains (3) summary
    cd00033
    Location:184 → 240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130 → 161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:47 → 74
    EGF_3; EGF domain

  7. XM_006538146.5 → XP_006538209.1  sushi domain-containing protein 1 isoform X8

    Conserved Domains (3) summary
    cd00033
    Location:184 → 240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130 → 161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:47 → 74
    EGF_3; EGF domain

  8. XM_006538145.5 → XP_006538208.1  sushi domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    B2RXU0
    Conserved Domains (3) summary
    cd00033
    Location:184 → 240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130 → 161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:47 → 74
    EGF_3; EGF domain

RNA

  1. XR_001784175.3 RNA Sequence

  2. XR_003954993.2 RNA Sequence

  3. XR_390338.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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